Variant report

Variant	rs11983051
Chromosome Location	chr7:21810164-21810165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10156026	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs10227372	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10268039	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268330	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111611	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12164106	0.90[JPT][hapmap]
rs17145316	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2014196	0.80[JPT][hapmap]
rs2072219	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2390552	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2390553	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2390555	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2390592	0.80[JPT][hapmap]
rs2906682	0.88[CEU][hapmap]
rs2906694	0.87[CEU][hapmap]
rs2965355	0.85[CEU][hapmap]
rs2965356	0.88[CEU][hapmap]
rs3735523	0.89[JPT][hapmap]
rs4722054	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6461598	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs6974214	0.87[EUR][1000 genomes]
rs6979777	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs73277712	0.87[EUR][1000 genomes]
rs7791639	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs961526	0.90[JPT][hapmap]
rs979669	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21805400-21810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:21805400-21810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:21805800-21810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:21807000-21810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:21807200-21811600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:21808800-21811000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:21809400-21811000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:21809600-21810400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr7:21810000-21810200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:21810000-21810200	Enhancers	Rectal Smooth Muscle	rectum
14	chr7:21810000-21811200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:21810000-21812800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:21810000-21814000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:21810000-21814600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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