Variant report

Variant	rs10156026
Chromosome Location	chr7:21795263-21795264
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10227372	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10268039	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10268330	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11983051	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs12111611	0.82[JPT][hapmap]
rs17145316	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2014196	0.86[JPT][hapmap]
rs2390592	0.86[JPT][hapmap]
rs2906688	0.81[CHB][hapmap]
rs2906689	0.81[CHB][hapmap]
rs2906690	0.81[CHB][hapmap]
rs2906694	0.85[CEU][hapmap]
rs2965358	0.81[CHB][hapmap]
rs3735523	1.00[JPT][hapmap]
rs4722054	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs6461598	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs6979777	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7791639	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs961526	1.00[JPT][hapmap]
rs979669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:21793400-21797600	Weak transcription	Gastric	stomach
4	chr7:21794200-21797800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:21794400-21795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:21795000-21796200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:21795000-21796200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:21795000-21796400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:21795000-21797200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:21795000-21797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:21795000-21804200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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