Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21798369..21801038-chr7:21803838..21806561,2	MCF-7	breast:
2	chr7:21466022..21468374-chr7:21798442..21800958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10156026	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10227372	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10268039	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10268330	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs10271832	0.97[ASN][1000 genomes]
rs11980396	0.81[JPT][hapmap]
rs11983051	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12111611	0.88[JPT][hapmap]
rs12164106	0.81[JPT][hapmap]
rs1557778	0.81[JPT][hapmap]
rs17145316	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2014196	0.90[JPT][hapmap]
rs2072219	0.85[CEU][hapmap]
rs2158128	0.81[JPT][hapmap]
rs2285684	0.81[JPT][hapmap]
rs2390552	0.85[EUR][1000 genomes]
rs2390553	0.85[EUR][1000 genomes]
rs2390555	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2390556	0.83[AMR][1000 genomes]
rs2390592	0.90[JPT][hapmap]
rs2906682	0.85[CEU][hapmap]
rs2906694	0.82[CEU][hapmap]
rs2965355	0.85[CEU][hapmap]
rs2965356	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs3735523	1.00[JPT][hapmap]
rs41479046	1.00[LWK][hapmap]
rs4273751	0.81[JPT][hapmap]
rs4722054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs6461598	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6974214	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979777	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs73277712	0.97[ASN][1000 genomes]
rs763543	0.81[JPT][hapmap]
rs961526	0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs979669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21789400-21804800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21795000-21804200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:21795000-21805200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:21797600-21804400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:21797600-21805000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:21798600-21803400	Weak transcription	Fetal Heart	heart

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