Variant report

Variant	rs2965355
Chromosome Location	chr7:21787705-21787706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10227372	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10268039	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10268330	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap]
rs11983051	0.85[CEU][hapmap]
rs17145316	0.85[CEU][hapmap]
rs2072219	1.00[CEU][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2072221	0.81[MEX][hapmap]
rs2214934	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906680	0.85[CEU][hapmap];0.94[CHD][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs2906682	1.00[CEU][hapmap]
rs2906692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906694	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2965356	1.00[CEU][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4722054	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6461598	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6979777	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7791639	0.85[CEU][hapmap]
rs886788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs886789	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21787400-21787800	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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