Variant report
| Variant | rs2906682 |
|---|---|
| Chromosome Location | chr7:21777165-21777166 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10227372 | 0.88[CEU][hapmap] |
| rs10268039 | 0.85[CEU][hapmap] |
| rs10268330 | 0.85[CEU][hapmap] |
| rs1029597 | 0.91[JPT][hapmap] |
| rs11983051 | 0.88[CEU][hapmap] |
| rs17145316 | 0.85[CEU][hapmap] |
| rs2072219 | 1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap] |
| rs2214934 | 0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2906680 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2906692 | 0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2906694 | 1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2965355 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2965356 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs2965414 | 0.82[JPT][hapmap] |
| rs2965423 | 0.81[JPT][hapmap] |
| rs4722054 | 0.85[CEU][hapmap] |
| rs6461598 | 0.86[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs6979777 | 0.88[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7791639 | 0.85[CEU][hapmap] |
| rs886788 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs886789 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016063 | chr7:21740433-21808410 | Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
