Variant report

Variant	rs17145316
Chromosome Location	chr7:21807071-21807072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:127731149..127731903-chr7:21806557..21807120,2	HCT-116	colon:
2	chr7:21301128..21302010-chr7:21806605..21807182,2	MCF-7	breast:
3	chr7:21295985..21296573-chr7:21806634..21807524,2	K562	blood:
4	chr7:21295823..21296612-chr7:21806734..21807628,5	MCF-7	breast:
5	chr7:21547043..21547991-chr7:21806813..21807569,3	MCF-7	breast:
6	chr7:21608001..21608689-chr7:21806668..21807749,3	MCF-7	breast:
7	chr7:21806980..21807646-chr7:22040800..22042221,5	MCF-7	breast:
8	chr7:21295299..21296544-chr7:21806799..21807582,4	MCF-7	breast:
9	chr7:21546916..21547496-chr7:21806696..21807577,2	MCF-7	breast:
10	chr7:21607583..21608493-chr7:21807066..21807743,2	MCF-7	breast:
11	chr7:21543389..21543978-chr7:21806643..21807254,2	MCF-7	breast:

No data

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10156026	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs10227372	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs10238697	1.00[CHB][hapmap]
rs10268039	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10268330	1.00[CEU][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10271832	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11983051	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12111611	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12164106	0.81[MKK][hapmap]
rs1963781	0.82[YRI][hapmap]
rs2014196	0.80[JPT][hapmap]
rs2072219	0.85[CEU][hapmap]
rs2390552	0.87[EUR][1000 genomes]
rs2390553	0.87[EUR][1000 genomes]
rs2390555	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2390556	0.83[AMR][1000 genomes]
rs2390592	0.80[JPT][hapmap]
rs2906682	0.85[CEU][hapmap]
rs2906694	0.82[CEU][hapmap]
rs2965355	0.85[CEU][hapmap]
rs2965356	0.85[CEU][hapmap]
rs3735523	0.89[JPT][hapmap]
rs4722054	1.00[CEU][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6461598	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6974214	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6979777	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73277712	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7791639	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs961526	0.91[CHD][hapmap];0.90[JPT][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap];0.88[ASN][1000 genomes]
rs979669	0.90[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:21803400-21808000	Enhancers	Fetal Heart	heart
3	chr7:21804000-21808000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:21805200-21810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:21805400-21810200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:21805400-21810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:21805600-21809600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:21805800-21810800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:21806800-21807200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:21806800-21807200	Enhancers	Fetal Thymus	thymus
14	chr7:21806800-21807200	Enhancers	Thymus	Thymus
15	chr7:21806800-21807600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:21806800-21807800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:21806800-21807800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:21807000-21810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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