Variant report
| Variant | rs2390592 |
|---|---|
| Chromosome Location | chr7:21861028-21861029 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10156026 | 0.86[JPT][hapmap] |
| rs10227372 | 0.90[JPT][hapmap] |
| rs10268039 | 0.90[JPT][hapmap] |
| rs10268330 | 0.90[JPT][hapmap] |
| rs11980396 | 0.90[JPT][hapmap] |
| rs11983051 | 0.80[JPT][hapmap] |
| rs12164106 | 0.90[JPT][hapmap] |
| rs1541357 | 0.82[JPT][hapmap] |
| rs1557778 | 0.90[JPT][hapmap] |
| rs17145316 | 0.80[JPT][hapmap] |
| rs1963781 | 0.91[AMR][1000 genomes] |
| rs2014196 | 0.81[CHD][hapmap];1.00[JPT][hapmap] |
| rs2158128 | 0.90[JPT][hapmap] |
| rs2285684 | 0.90[JPT][hapmap] |
| rs2390593 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2893058 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3735523 | 0.89[JPT][hapmap] |
| rs4273751 | 0.90[JPT][hapmap] |
| rs4722054 | 0.90[JPT][hapmap] |
| rs6461598 | 0.90[JPT][hapmap] |
| rs6979777 | 0.90[JPT][hapmap] |
| rs763543 | 0.90[JPT][hapmap] |
| rs7777804 | 0.90[JPT][hapmap] |
| rs7791639 | 0.90[JPT][hapmap] |
| rs7806574 | 0.90[JPT][hapmap] |
| rs961526 | 0.90[JPT][hapmap] |
| rs979669 | 1.00[CEU][hapmap];0.90[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv933320 | chr7:21840543-21882825 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv520409 | chr7:21860316-21861028 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21860400-21882200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
