Variant report

Variant	rs10266725
Chromosome Location	chr7:19119588-19119589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HDAC9-6	chr7:19118903-19120419	NONHSAT119376
2	lnc-HDAC9-6	chr7:19118903-19120418	ucscGeneNc_uc003sul_1

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10216193	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10227338	1.00[ASN][1000 genomes]
rs10227439	1.00[ASN][1000 genomes]
rs10228000	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10229095	1.00[EUR][1000 genomes]
rs10235982	0.92[EUR][1000 genomes]
rs10240640	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248134	0.92[EUR][1000 genomes]
rs10248747	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10249481	1.00[EUR][1000 genomes]
rs10251141	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10251600	0.92[EUR][1000 genomes]
rs10252615	1.00[ASN][1000 genomes]
rs10253091	1.00[EUR][1000 genomes]
rs10256989	1.00[EUR][1000 genomes]
rs10263856	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268428	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270625	1.00[EUR][1000 genomes]
rs10274013	1.00[EUR][1000 genomes]
rs10275030	1.00[ASN][1000 genomes]
rs10275229	1.00[ASN][1000 genomes]
rs10279195	1.00[EUR][1000 genomes]
rs10279917	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11971269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11974081	1.00[EUR][1000 genomes]
rs11974849	1.00[EUR][1000 genomes]
rs11975276	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975863	1.00[EUR][1000 genomes]
rs11976041	1.00[EUR][1000 genomes]
rs11980713	1.00[EUR][1000 genomes]
rs11981268	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981706	1.00[ASN][1000 genomes]
rs11981966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140629	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17423728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521720	1.00[ASN][1000 genomes]
rs2521735	1.00[ASN][1000 genomes]
rs2521737	1.00[ASN][1000 genomes]
rs2717337	1.00[ASN][1000 genomes]
rs2717340	1.00[ASN][1000 genomes]
rs2717364	1.00[ASN][1000 genomes]
rs28399914	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28572026	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28579949	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627595	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28720702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753114	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28797565	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28803198	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28820332	1.00[EUR][1000 genomes]
rs2892913	1.00[ASN][1000 genomes]
rs2892914	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2905456	1.00[ASN][1000 genomes]
rs2905459	1.00[ASN][1000 genomes]
rs429	1.00[ASN][1000 genomes]
rs4383884	1.00[ASN][1000 genomes]
rs4610631	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60781112	1.00[EUR][1000 genomes]
rs6943143	1.00[EUR][1000 genomes]
rs6945718	1.00[EUR][1000 genomes]
rs6950144	1.00[EUR][1000 genomes]
rs6960648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971116	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972974	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73323561	1.00[ASN][1000 genomes]
rs7776577	1.00[ASN][1000 genomes]
rs975893	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032503	chr7:19092460-19134995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1032126	chr7:19092460-19137228	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2761116	chr7:19092472-19136307	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv519024	chr7:19103926-19134119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19113800-19120000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:19118000-19120400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19118200-19120400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:19118200-19120600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:19118400-19119600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:19118600-19120000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:19118600-19120400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:19118600-19120800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:19118600-19121600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:19118800-19119600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:19118800-19120000	Enhancers	NHEK	skin
12	chr7:19118800-19120200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:19118800-19120400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:19118800-19120400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:19118800-19120400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:19118800-19121000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:19119000-19119800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr7:19119000-19120000	Weak transcription	Placenta	Placenta
19	chr7:19119000-19134200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:19119200-19119600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:19119200-19129000	Weak transcription	NHDF-Ad	bronchial
22	chr7:19119200-19146000	Weak transcription	HSMM	muscle

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