Variant report

Variant	rs6950144
Chromosome Location	chr7:19089435-19089436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10216193	1.00[EUR][1000 genomes]
rs10228000	1.00[EUR][1000 genomes]
rs10229095	1.00[EUR][1000 genomes]
rs10235982	0.92[EUR][1000 genomes]
rs10240640	1.00[EUR][1000 genomes]
rs10244882	1.00[ASN][1000 genomes]
rs10248134	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248747	0.92[EUR][1000 genomes]
rs10249481	1.00[EUR][1000 genomes]
rs10251141	0.85[EUR][1000 genomes]
rs10251600	0.92[EUR][1000 genomes]
rs10253091	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256776	1.00[ASN][1000 genomes]
rs10256989	1.00[EUR][1000 genomes]
rs10263856	1.00[EUR][1000 genomes]
rs10265255	1.00[ASN][1000 genomes]
rs10266725	1.00[EUR][1000 genomes]
rs10268126	1.00[EUR][1000 genomes]
rs10268428	1.00[EUR][1000 genomes]
rs10270625	1.00[EUR][1000 genomes]
rs10270859	1.00[ASN][1000 genomes]
rs10274013	1.00[EUR][1000 genomes]
rs10279195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279917	1.00[EUR][1000 genomes]
rs11971269	1.00[EUR][1000 genomes]
rs11974081	1.00[EUR][1000 genomes]
rs11974849	1.00[EUR][1000 genomes]
rs11975276	1.00[EUR][1000 genomes]
rs11975863	1.00[EUR][1000 genomes]
rs11976041	1.00[EUR][1000 genomes]
rs11980713	1.00[EUR][1000 genomes]
rs11981268	1.00[EUR][1000 genomes]
rs11981966	1.00[EUR][1000 genomes]
rs1548576	1.00[ASN][1000 genomes]
rs17140565	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140629	1.00[EUR][1000 genomes]
rs17423728	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2078978	1.00[ASN][1000 genomes]
rs2214627	1.00[ASN][1000 genomes]
rs2263233	1.00[ASN][1000 genomes]
rs2521722	1.00[ASN][1000 genomes]
rs2717362	1.00[ASN][1000 genomes]
rs28399914	1.00[EUR][1000 genomes]
rs28572026	1.00[EUR][1000 genomes]
rs28579949	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627595	1.00[EUR][1000 genomes]
rs28720702	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28753114	1.00[EUR][1000 genomes]
rs28797565	1.00[EUR][1000 genomes]
rs28803198	1.00[EUR][1000 genomes]
rs28820332	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892914	1.00[EUR][1000 genomes]
rs2906045	1.00[ASN][1000 genomes]
rs2965021	1.00[ASN][1000 genomes]
rs2965030	1.00[ASN][1000 genomes]
rs60301616	1.00[ASN][1000 genomes]
rs60781112	1.00[EUR][1000 genomes]
rs6943143	1.00[EUR][1000 genomes]
rs6945718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960648	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6964820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6965235	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970557	1.00[EUR][1000 genomes]
rs6971116	1.00[EUR][1000 genomes]
rs6972974	1.00[EUR][1000 genomes]
rs6973803	1.00[ASN][1000 genomes]
rs73314876	1.00[ASN][1000 genomes]
rs886227	1.00[ASN][1000 genomes]
rs9655162	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19082800-19100400	Weak transcription	HSMM	muscle
2	chr7:19085200-19091600	Weak transcription	NHDF-Ad	bronchial
3	chr7:19085400-19089800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:19086200-19101800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19086600-19100000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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