Variant report

Variant	rs2263233
Chromosome Location	chr7:19085685-19085686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10224508	1.00[EUR][1000 genomes]
rs10227338	1.00[EUR][1000 genomes]
rs10227439	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10229075	1.00[EUR][1000 genomes]
rs10244882	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248134	1.00[ASN][1000 genomes]
rs10251015	1.00[EUR][1000 genomes]
rs10252615	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265255	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274013	0.82[AMR][1000 genomes]
rs10275030	1.00[EUR][1000 genomes]
rs10275229	1.00[EUR][1000 genomes]
rs10279195	1.00[ASN][1000 genomes]
rs11981706	1.00[EUR][1000 genomes]
rs1548576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078978	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521720	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521722	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521723	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2521734	1.00[EUR][1000 genomes]
rs2521735	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2521737	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717337	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717340	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2717361	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2717362	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2717364	1.00[EUR][1000 genomes]
rs2717365	1.00[EUR][1000 genomes]
rs28611415	1.00[EUR][1000 genomes]
rs28820332	1.00[ASN][1000 genomes]
rs2892913	1.00[EUR][1000 genomes]
rs2905456	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2905458	0.80[AMR][1000 genomes]
rs2905459	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2906045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965021	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383884	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4610631	1.00[EUR][1000 genomes]
rs60301616	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60744788	1.00[EUR][1000 genomes]
rs6945718	1.00[ASN][1000 genomes]
rs6950144	1.00[ASN][1000 genomes]
rs6953130	1.00[EUR][1000 genomes]
rs6971603	0.96[EUR][1000 genomes]
rs6973803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323561	1.00[EUR][1000 genomes]
rs7776577	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs886227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975893	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19075600-19089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19082800-19100400	Weak transcription	HSMM	muscle
3	chr7:19083400-19087400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:19084800-19086200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19084800-19086600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:19085200-19091600	Weak transcription	NHDF-Ad	bronchial
7	chr7:19085400-19089800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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