Variant report

Variant	rs1548576
Chromosome Location	chr7:19070165-19070166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10224508	1.00[EUR][1000 genomes]
rs10227338	1.00[EUR][1000 genomes]
rs10227439	1.00[EUR][1000 genomes]
rs10229075	1.00[EUR][1000 genomes]
rs10244882	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248134	1.00[ASN][1000 genomes]
rs10251015	1.00[EUR][1000 genomes]
rs10252615	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10256776	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265255	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270859	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275030	1.00[EUR][1000 genomes]
rs10275229	1.00[EUR][1000 genomes]
rs10279195	1.00[ASN][1000 genomes]
rs11981706	1.00[EUR][1000 genomes]
rs2078978	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521720	1.00[EUR][1000 genomes]
rs2521722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521723	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2521734	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2521735	1.00[EUR][1000 genomes]
rs2521737	1.00[EUR][1000 genomes]
rs2717337	1.00[EUR][1000 genomes]
rs2717340	1.00[EUR][1000 genomes]
rs2717361	0.93[EUR][1000 genomes]
rs2717362	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2717364	1.00[EUR][1000 genomes]
rs2717365	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28611415	1.00[EUR][1000 genomes]
rs28820332	1.00[ASN][1000 genomes]
rs2892913	1.00[EUR][1000 genomes]
rs2905456	1.00[EUR][1000 genomes]
rs2905459	1.00[EUR][1000 genomes]
rs2906045	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965021	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965030	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4383884	1.00[EUR][1000 genomes]
rs4610631	1.00[EUR][1000 genomes]
rs60301616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60744788	1.00[EUR][1000 genomes]
rs6945718	1.00[ASN][1000 genomes]
rs6950144	1.00[ASN][1000 genomes]
rs6953130	1.00[EUR][1000 genomes]
rs6971603	0.96[EUR][1000 genomes]
rs6973803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314876	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323561	1.00[EUR][1000 genomes]
rs7776577	1.00[EUR][1000 genomes]
rs886227	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655162	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:19069200-19071000	Enhancers	Osteobl	bone
4	chr7:19069400-19070200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:19069400-19070800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:19069400-19071000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:19069600-19070200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:19069600-19070200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:19069600-19070400	Enhancers	HSMM	muscle
10	chr7:19069600-19071000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:19069800-19071000	Enhancers	NHDF-Ad	bronchial
12	chr7:19070000-19070200	Enhancers	HSMMtube	muscle

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