Variant report

Variant	rs10270859
Chromosome Location	chr7:19064537-19064538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10224508	1.00[EUR][1000 genomes]
rs10227338	1.00[EUR][1000 genomes]
rs10227439	1.00[EUR][1000 genomes]
rs10229075	1.00[EUR][1000 genomes]
rs10244882	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248134	1.00[ASN][1000 genomes]
rs10251015	1.00[EUR][1000 genomes]
rs10252615	1.00[EUR][1000 genomes]
rs10256776	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265255	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275030	1.00[EUR][1000 genomes]
rs10275229	1.00[EUR][1000 genomes]
rs10279195	1.00[ASN][1000 genomes]
rs11981706	1.00[EUR][1000 genomes]
rs1548576	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078978	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214627	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521720	1.00[EUR][1000 genomes]
rs2521722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521723	0.87[EUR][1000 genomes]
rs2521734	1.00[EUR][1000 genomes]
rs2521735	1.00[EUR][1000 genomes]
rs2521737	1.00[EUR][1000 genomes]
rs2717337	1.00[EUR][1000 genomes]
rs2717340	1.00[EUR][1000 genomes]
rs2717361	0.93[EUR][1000 genomes]
rs2717362	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2717364	1.00[EUR][1000 genomes]
rs2717365	1.00[EUR][1000 genomes]
rs28611415	1.00[EUR][1000 genomes]
rs28820332	1.00[ASN][1000 genomes]
rs2892913	1.00[EUR][1000 genomes]
rs2905456	1.00[EUR][1000 genomes]
rs2905459	1.00[EUR][1000 genomes]
rs2906045	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965021	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429	1.00[EUR][1000 genomes]
rs4383884	1.00[EUR][1000 genomes]
rs4610631	1.00[EUR][1000 genomes]
rs60301616	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60744788	1.00[EUR][1000 genomes]
rs6945718	1.00[ASN][1000 genomes]
rs6950144	1.00[ASN][1000 genomes]
rs6953130	1.00[EUR][1000 genomes]
rs6971603	0.96[EUR][1000 genomes]
rs6973803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73314876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323561	1.00[EUR][1000 genomes]
rs7776577	1.00[EUR][1000 genomes]
rs886227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9655162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19061400-19065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:19063200-19064600	Enhancers	HSMM	muscle
3	chr7:19063200-19064600	Enhancers	HSMMtube	muscle
4	chr7:19063400-19064600	Enhancers	NHDF-Ad	bronchial
5	chr7:19063400-19067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:19063600-19064600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:19063800-19064600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:19064000-19064600	Enhancers	HMEC	breast
9	chr7:19064400-19064600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:19064400-19064600	Enhancers	NH-A	brain
11	chr7:19064400-19064600	Enhancers	Osteobl	bone
12	chr7:19064400-19065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:19064400-19065800	Weak transcription	NHEK	skin
14	chr7:19064400-19066000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:19064400-19066600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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