Variant report

Variant	rs17140565
Chromosome Location	chr7:19101361-19101362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10216193	1.00[EUR][1000 genomes]
rs10227338	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10227439	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10228000	1.00[EUR][1000 genomes]
rs10229095	1.00[EUR][1000 genomes]
rs10235982	0.92[EUR][1000 genomes]
rs10240640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248134	0.92[EUR][1000 genomes]
rs10248747	0.92[EUR][1000 genomes]
rs10249481	1.00[EUR][1000 genomes]
rs10251141	0.85[EUR][1000 genomes]
rs10251600	0.92[EUR][1000 genomes]
rs10252615	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10253091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256989	1.00[EUR][1000 genomes]
rs10263856	1.00[EUR][1000 genomes]
rs10266725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268126	1.00[EUR][1000 genomes]
rs10268428	1.00[EUR][1000 genomes]
rs10270625	1.00[EUR][1000 genomes]
rs10274013	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275030	1.00[ASN][1000 genomes]
rs10275229	1.00[ASN][1000 genomes]
rs10279195	1.00[EUR][1000 genomes]
rs10279917	1.00[EUR][1000 genomes]
rs11971269	1.00[EUR][1000 genomes]
rs11974081	1.00[EUR][1000 genomes]
rs11974849	1.00[EUR][1000 genomes]
rs11975276	1.00[EUR][1000 genomes]
rs11975863	1.00[EUR][1000 genomes]
rs11976041	1.00[EUR][1000 genomes]
rs11980713	1.00[EUR][1000 genomes]
rs11981268	1.00[EUR][1000 genomes]
rs11981706	1.00[ASN][1000 genomes]
rs11981966	1.00[EUR][1000 genomes]
rs17140629	1.00[EUR][1000 genomes]
rs17423728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2521720	1.00[ASN][1000 genomes]
rs2521722	0.84[AMR][1000 genomes]
rs2521735	1.00[ASN][1000 genomes]
rs2521737	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2717337	1.00[ASN][1000 genomes]
rs2717340	1.00[ASN][1000 genomes]
rs2717362	0.84[AMR][1000 genomes]
rs2717364	1.00[ASN][1000 genomes]
rs28399914	1.00[EUR][1000 genomes]
rs28572026	1.00[EUR][1000 genomes]
rs28579949	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28720702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753114	1.00[EUR][1000 genomes]
rs28797565	1.00[EUR][1000 genomes]
rs28803198	1.00[EUR][1000 genomes]
rs28820332	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2892913	1.00[ASN][1000 genomes]
rs2892914	1.00[EUR][1000 genomes]
rs2905456	1.00[ASN][1000 genomes]
rs2905458	0.80[AMR][1000 genomes]
rs2905459	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs429	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4383884	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4610631	1.00[ASN][1000 genomes]
rs60301616	0.80[AMR][1000 genomes]
rs60781112	1.00[EUR][1000 genomes]
rs6943143	1.00[EUR][1000 genomes]
rs6945718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960648	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964820	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965235	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970557	1.00[EUR][1000 genomes]
rs6971116	1.00[EUR][1000 genomes]
rs6972974	1.00[EUR][1000 genomes]
rs73323561	1.00[ASN][1000 genomes]
rs7776577	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs975893	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032503	chr7:19092460-19134995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1032126	chr7:19092460-19137228	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2761116	chr7:19092472-19136307	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19086200-19101800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:19100200-19101400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:19100400-19101400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:19101000-19101400	Flanking Active TSS	NHDF-Ad	bronchial
5	chr7:19101200-19102000	Weak transcription	HSMMtube	muscle
6	chr7:19101200-19102200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:19101200-19105400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:19101200-19105400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links