Variant report

Variant	rs10249481
Chromosome Location	chr7:19066519-19066520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10216193	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224508	1.00[ASN][1000 genomes]
rs10228000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228944	1.00[ASN][1000 genomes]
rs10229075	1.00[ASN][1000 genomes]
rs10229095	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235982	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240640	1.00[EUR][1000 genomes]
rs10248134	0.92[EUR][1000 genomes]
rs10248747	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251015	1.00[ASN][1000 genomes]
rs10251141	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251600	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253091	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263856	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266725	1.00[EUR][1000 genomes]
rs10268126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268428	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270625	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279195	1.00[EUR][1000 genomes]
rs10279917	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971269	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974081	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974849	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975276	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980713	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981268	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227668	1.00[CEU][hapmap]
rs17140565	1.00[EUR][1000 genomes]
rs17140629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423728	1.00[EUR][1000 genomes]
rs2717334	1.00[ASN][1000 genomes]
rs28399914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28572026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28579949	1.00[EUR][1000 genomes]
rs28611415	1.00[ASN][1000 genomes]
rs28627595	1.00[EUR][1000 genomes]
rs28720702	1.00[EUR][1000 genomes]
rs28753114	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28797565	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803198	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28820332	1.00[EUR][1000 genomes]
rs2892914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60744788	1.00[ASN][1000 genomes]
rs60781112	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943143	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945718	1.00[EUR][1000 genomes]
rs6948617	1.00[ASN][1000 genomes]
rs6950144	1.00[EUR][1000 genomes]
rs6953130	1.00[ASN][1000 genomes]
rs6960648	1.00[EUR][1000 genomes]
rs6964820	1.00[EUR][1000 genomes]
rs6965235	1.00[EUR][1000 genomes]
rs6970557	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19063400-19067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19064400-19066600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19064600-19069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:19064600-19069600	Weak transcription	HSMM	muscle
7	chr7:19064600-19070000	Weak transcription	HSMMtube	muscle
8	chr7:19065800-19066600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:19065800-19067000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:19065800-19067000	Enhancers	NHDF-Ad	bronchial
11	chr7:19065800-19067000	Enhancers	NHEK	skin
12	chr7:19065800-19067200	Enhancers	HMEC	breast
13	chr7:19066000-19067000	Enhancers	NH-A	brain
14	chr7:19066000-19067200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:19066000-19067200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:19066000-19067200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:19066000-19067200	Enhancers	Osteobl	bone

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