Variant report

Variant	rs10269099
Chromosome Location	chr7:126371011-126371012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126368803..126371577-chr7:126373352..126375062,2	K562	blood:
2	chr7:126338487..126341370-chr7:126368124..126371050,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10229765	1.00[CEU][hapmap]
rs10241618	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10250459	1.00[CHB][hapmap]
rs10259217	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10259229	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10487457	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10487459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs11763603	0.81[GIH][hapmap]
rs11763734	0.83[GIH][hapmap]
rs11769307	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11770578	0.83[GIH][hapmap]
rs12706745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222700	0.97[ASN][1000 genomes]
rs1361995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs1361999	0.97[ASN][1000 genomes]
rs1419508	0.83[GIH][hapmap]
rs1592370	0.84[JPT][hapmap]
rs17150172	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs17619947	0.97[ASN][1000 genomes]
rs17626816	0.82[CEU][hapmap]
rs2106600	0.97[ASN][1000 genomes]
rs2157977	0.83[GIH][hapmap]
rs2157978	0.83[GIH][hapmap]
rs2299501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs2299502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap]
rs2299503	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap]
rs2299505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299508	0.97[ASN][1000 genomes]
rs35825148	0.97[ASN][1000 genomes]
rs727903	1.00[CHB][hapmap]
rs929175	1.00[CHB][hapmap]
rs950789	0.84[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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