Variant report

Variant	rs11769307
Chromosome Location	chr7:126460664-126460665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1008260	0.85[JPT][hapmap]
rs10227949	0.85[JPT][hapmap]
rs10229765	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs10239010	0.85[JPT][hapmap]
rs10241618	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs10250459	1.00[CHB][hapmap]
rs10254445	0.85[JPT][hapmap]
rs10259217	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10259229	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10269099	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs10487457	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10487459	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11768413	1.00[JPT][hapmap]
rs11769459	0.86[JPT][hapmap]
rs11769491	0.85[JPT][hapmap]
rs12706745	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs12706747	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs13225829	1.00[JPT][hapmap]
rs13226065	0.86[JPT][hapmap]
rs13240076	0.86[JPT][hapmap]
rs13240418	0.85[JPT][hapmap]
rs13242233	0.86[JPT][hapmap]
rs1361988	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs1361995	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1361998	0.86[JPT][hapmap]
rs1362005	0.86[JPT][hapmap]
rs1419492	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1557646	0.85[JPT][hapmap]
rs1592370	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17150172	1.00[CHB][hapmap]
rs17620525	0.86[JPT][hapmap]
rs17626816	0.86[JPT][hapmap]
rs17627206	0.85[JPT][hapmap]
rs17683174	0.85[JPT][hapmap]
rs17683391	0.85[JPT][hapmap]
rs17683462	1.00[YRI][hapmap]
rs17683715	1.00[YRI][hapmap]
rs17684388	1.00[YRI][hapmap]
rs17684592	0.92[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17693362	0.85[JPT][hapmap]
rs17865082	1.00[YRI][hapmap]
rs1946109	0.86[JPT][hapmap]
rs1989849	0.82[JPT][hapmap]
rs1989850	0.85[JPT][hapmap]
rs2023733	0.86[JPT][hapmap]
rs2023734	0.85[JPT][hapmap]
rs2023735	0.85[JPT][hapmap]
rs2106353	0.82[JPT][hapmap]
rs2157753	0.86[ASN][1000 genomes]
rs2157978	0.85[JPT][hapmap]
rs2283071	0.86[JPT][hapmap]
rs2283076	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2283079	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2299501	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2299502	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2299503	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2299505	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2299506	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2299507	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2299516	0.85[JPT][hapmap]
rs2299517	0.85[JPT][hapmap]
rs2299518	0.86[JPT][hapmap]
rs2299519	1.00[JPT][hapmap]
rs35810597	0.86[ASN][1000 genomes]
rs35864494	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808154	1.00[JPT][hapmap]
rs4728053	0.86[JPT][hapmap]
rs4728054	0.86[ASN][1000 genomes]
rs4728055	0.86[ASN][1000 genomes]
rs4731323	0.85[JPT][hapmap]
rs4731330	0.85[JPT][hapmap]
rs4731331	0.86[JPT][hapmap]
rs4731332	0.86[ASN][1000 genomes]
rs6467099	0.86[JPT][hapmap]
rs6951643	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6951771	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs727903	1.00[CHB][hapmap]
rs7809518	0.82[JPT][hapmap]
rs929175	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929211	0.85[JPT][hapmap]
rs950789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs954661	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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