Variant report

Variant	rs35810597
Chromosome Location	chr7:126479819-126479820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126477235-126483531..7:126746034-126750148	H1-hESC	embryonic stem cell:	embryo
2	7:126477235-126483531..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
3	7:126477235-126483531..7:127070190-127076279	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11773772	0.83[ASN][1000 genomes]
rs12706747	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13226065	0.90[ASN][1000 genomes]
rs13240418	0.90[ASN][1000 genomes]
rs1361988	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362005	0.84[ASN][1000 genomes]
rs1419492	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592370	0.84[ASN][1000 genomes]
rs17626816	0.84[ASN][1000 genomes]
rs17683174	0.83[ASN][1000 genomes]
rs17683391	0.84[ASN][1000 genomes]
rs1989850	0.84[ASN][1000 genomes]
rs2023735	0.84[ASN][1000 genomes]
rs2157753	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2283079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299517	0.84[ASN][1000 genomes]
rs2299518	0.84[ASN][1000 genomes]
rs2299519	0.84[ASN][1000 genomes]
rs2299520	0.89[ASN][1000 genomes]
rs34309246	0.84[ASN][1000 genomes]
rs35351503	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35864494	0.86[ASN][1000 genomes]
rs4728054	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4728055	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731331	0.90[ASN][1000 genomes]
rs4731332	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467099	0.89[ASN][1000 genomes]
rs6951643	0.84[ASN][1000 genomes]
rs6951771	0.84[ASN][1000 genomes]
rs6976213	0.90[ASN][1000 genomes]
rs7809518	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929175	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv608377	chr7:126478190-126512514	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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