Variant report

Variant	rs2157753
Chromosome Location	chr7:126472723-126472724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1008260	0.92[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs10216314	0.83[EUR][1000 genomes]
rs10229765	0.84[JPT][hapmap]
rs10239010	0.81[CEU][hapmap]
rs10241618	0.86[JPT][hapmap]
rs10254445	0.86[JPT][hapmap]
rs10257388	0.81[CEU][hapmap]
rs10954133	0.81[CEU][hapmap]
rs11763603	0.81[MEX][hapmap]
rs11769459	0.86[JPT][hapmap]
rs11769491	0.86[JPT][hapmap]
rs11773772	0.83[ASN][1000 genomes]
rs12706742	0.86[JPT][hapmap]
rs12706746	0.84[JPT][hapmap]
rs12706747	0.81[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13224779	0.82[CEU][hapmap]
rs13225829	0.82[JPT][hapmap]
rs13226065	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13239613	0.82[EUR][1000 genomes]
rs13240076	0.86[JPT][hapmap]
rs13240418	0.82[CEU][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13242233	0.86[JPT][hapmap]
rs1361988	1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361998	0.86[JPT][hapmap]
rs1362004	0.80[EUR][1000 genomes]
rs1362005	0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419492	0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557646	0.81[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap]
rs1592370	0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17620525	0.86[JPT][hapmap]
rs17626816	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs17627206	0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs17683174	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17683391	0.95[GIH][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17693362	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs1946109	0.86[JPT][hapmap]
rs1989849	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs1989850	0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2023733	0.86[JPT][hapmap]
rs2023734	0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs2023735	0.92[GIH][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2283071	0.86[JPT][hapmap]
rs2283079	0.90[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299516	0.84[JPT][hapmap]
rs2299517	0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2299518	0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299519	0.95[GIH][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299520	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34309246	0.84[ASN][1000 genomes]
rs35351503	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35810597	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35864494	0.86[ASN][1000 genomes]
rs4728053	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs4728054	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4728055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731323	0.86[JPT][hapmap]
rs4731330	0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs4731331	0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467099	0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948500	0.83[EUR][1000 genomes]
rs6951643	0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6951771	0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6975541	0.85[ASW][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs6976213	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809518	0.92[ASW][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929175	0.86[ASN][1000 genomes]
rs929211	0.86[JPT][hapmap]
rs954661	0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126471400-126473600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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