Variant report
Variant | rs6976213 |
---|---|
Chromosome Location | chr7:126445042-126445043 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:8 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 7:126441098-126445427..7:127009457-127018926 | GM12878 | blood: | |
2 | 7:126441098-126445427..7:126746034-126750148 | H1-hESC | embryonic stem cell: | embryo |
3 | 7:126441098-126445427..7:126880504-126885902 | H1-hESC | embryonic stem cell: | embryo |
4 | 7:126441098-126445427..7:126756671-126761022 | H1-hESC | embryonic stem cell: | embryo |
5 | 7:126441098-126445427..7:127233104-127239235 | H1-hESC | embryonic stem cell: | embryo |
6 | 7:126085913-126088095..7:126441098-126445427 | GM12878 | blood: | |
7 | 7:126441098-126445427..7:126890676-126899918 | GM12878 | blood: | |
8 | 7:126441098-126445427..7:126733290-126737485 | H1-hESC | embryonic stem cell: | embryo |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000106328 | Chromatin interaction |
ENSG00000179603 | Chromatin interaction |
ENSG00000048405 | Chromatin interaction |
ENSG00000179562 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1008260 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10216314 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11773772 | 0.95[EUR][1000 genomes] |
rs12706747 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs13222700 | 0.81[EUR][1000 genomes] |
rs13226065 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13239613 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs13240076 | 0.96[EUR][1000 genomes] |
rs13240418 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1361988 | 0.90[ASN][1000 genomes] |
rs1361999 | 0.82[EUR][1000 genomes] |
rs1362002 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1362004 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1362005 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1419492 | 0.90[ASN][1000 genomes] |
rs1592370 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17619947 | 0.81[EUR][1000 genomes] |
rs17626816 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17627206 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17683174 | 0.95[EUR][1000 genomes] |
rs17683391 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1989849 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1989850 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2023734 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2023735 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2106600 | 0.81[EUR][1000 genomes] |
rs2157753 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2283079 | 0.90[ASN][1000 genomes] |
rs2299508 | 0.81[EUR][1000 genomes] |
rs2299517 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2299518 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2299519 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2299520 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs34309246 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35351503 | 0.84[ASN][1000 genomes] |
rs35810597 | 0.90[ASN][1000 genomes] |
rs35825148 | 0.81[EUR][1000 genomes] |
rs4728053 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4728054 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4728055 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4731330 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4731331 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4731332 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6467099 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6948500 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6951643 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6951771 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7809518 | 0.84[ASN][1000 genomes] |
rs929211 | 0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1032612 | chr7:126417533-126456282 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126443400-126446000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr7:126445000-126445800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |