Variant report

Variant	rs4728055
Chromosome Location	chr7:126471780-126471781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126470017-126471969..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1008260	0.82[EUR][1000 genomes]
rs10216314	0.83[EUR][1000 genomes]
rs11773772	0.83[ASN][1000 genomes]
rs12706747	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13226065	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13239613	0.82[EUR][1000 genomes]
rs13240418	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1361988	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362004	0.80[EUR][1000 genomes]
rs1362005	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419492	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592370	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17626816	0.84[ASN][1000 genomes]
rs17627206	0.82[EUR][1000 genomes]
rs17683174	0.83[ASN][1000 genomes]
rs17683391	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1989849	0.81[EUR][1000 genomes]
rs1989850	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2023734	0.82[EUR][1000 genomes]
rs2023735	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2157753	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2283079	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299517	0.84[ASN][1000 genomes]
rs2299518	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299519	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299520	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34309246	0.84[ASN][1000 genomes]
rs35351503	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35810597	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35864494	0.86[ASN][1000 genomes]
rs4728053	0.83[EUR][1000 genomes]
rs4728054	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731330	0.83[EUR][1000 genomes]
rs4731331	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467099	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948500	0.83[EUR][1000 genomes]
rs6951643	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6951771	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6976213	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7809518	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929175	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2761365	chr7:126452758-126506602	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126471400-126471800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr7:126471400-126473600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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