Variant report

Variant	rs1362005
Chromosome Location	chr7:126422818-126422819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126422481..126424555-chr7:126427314..126429258,3	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1008260	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10215498	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10215590	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10216287	1.00[CHB][hapmap]
rs10216314	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10227255	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10229765	1.00[JPT][hapmap]
rs10239010	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10241618	1.00[JPT][hapmap]
rs10252649	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10254445	1.00[JPT][hapmap]
rs10254692	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10257388	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10259217	0.88[JPT][hapmap]
rs10259229	0.88[JPT][hapmap]
rs10271146	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10487457	0.88[JPT][hapmap]
rs10487459	0.86[JPT][hapmap]
rs10487460	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10954133	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11763603	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11763734	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11765100	1.00[CHB][hapmap]
rs11768413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11769307	0.86[JPT][hapmap]
rs11769459	1.00[JPT][hapmap]
rs11769491	1.00[JPT][hapmap]
rs11770578	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11773772	0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12333442	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12333645	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12706742	0.86[JPT][hapmap]
rs12706745	0.86[JPT][hapmap]
rs12706746	0.84[JPT][hapmap]
rs12706747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13222700	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs13224779	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13225829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13226065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13226841	0.88[JPT][hapmap]
rs13236505	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13239613	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13240076	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13240418	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13242233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1361995	0.88[JPT][hapmap]
rs1361998	1.00[JPT][hapmap]
rs1361999	0.82[EUR][1000 genomes]
rs1362002	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1362004	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1419492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1419508	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1557646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1592370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17150172	0.88[JPT][hapmap]
rs17619947	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs17620189	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17620525	1.00[JPT][hapmap]
rs17626816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17627206	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17683174	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17683391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17693362	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1946109	1.00[JPT][hapmap]
rs1946114	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1946115	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1989849	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1989850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023733	1.00[JPT][hapmap]
rs2023734	1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2023735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106352	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2106600	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2106601	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2157753	0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2157977	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2157978	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2157979	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2214159	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2283071	1.00[JPT][hapmap]
rs2283076	0.85[JPT][hapmap]
rs2283079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2299501	0.88[JPT][hapmap]
rs2299502	0.86[JPT][hapmap]
rs2299503	0.86[JPT][hapmap]
rs2299505	0.86[JPT][hapmap]
rs2299506	0.88[JPT][hapmap]
rs2299507	0.86[JPT][hapmap]
rs2299508	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2299509	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2299510	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2299511	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2299516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299518	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299520	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2896376	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs34309246	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35810597	0.84[ASN][1000 genomes]
rs35825148	0.81[EUR][1000 genomes]
rs3808154	0.85[JPT][hapmap]
rs4728053	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4728054	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4728055	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4731323	1.00[JPT][hapmap]
rs4731330	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4731331	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731332	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6467099	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6948500	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6951643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6951771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6969572	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6975541	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6976213	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809518	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs886179	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs929175	0.85[JPT][hapmap]
rs929211	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs950789	0.86[JPT][hapmap]
rs954661	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126420800-126424200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:126422800-126423200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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