Variant report

Variant	rs2299505
Chromosome Location	chr7:126376133-126376134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126365451..126368313-chr7:126375080..126378772,3	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1008260	0.86[JPT][hapmap]
rs10215498	1.00[JPT][hapmap]
rs10215590	1.00[JPT][hapmap]
rs10216287	1.00[JPT][hapmap]
rs10229765	1.00[CEU][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap]
rs10241618	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250459	1.00[CHB][hapmap];0.88[YRI][hapmap]
rs10252649	1.00[JPT][hapmap]
rs10254445	0.86[JPT][hapmap]
rs10254692	1.00[JPT][hapmap]
rs10259217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10259229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10269099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap]
rs10271146	1.00[JPT][hapmap]
rs10487457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10487459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10487460	1.00[JPT][hapmap]
rs10954133	1.00[JPT][hapmap]
rs11763603	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs11763734	0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs11768413	1.00[JPT][hapmap]
rs11769307	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11769459	0.86[JPT][hapmap]
rs11769491	0.86[JPT][hapmap]
rs11770578	0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs12333442	1.00[JPT][hapmap]
rs12333645	1.00[JPT][hapmap]
rs12706742	0.86[JPT][hapmap]
rs12706745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706746	0.84[JPT][hapmap]
rs12706747	0.86[JPT][hapmap]
rs13222700	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13224779	1.00[JPT][hapmap]
rs13225829	0.82[JPT][hapmap]
rs13226065	0.86[JPT][hapmap]
rs13226841	1.00[JPT][hapmap]
rs13236505	1.00[JPT][hapmap]
rs13240076	0.86[JPT][hapmap]
rs13240418	0.86[JPT][hapmap]
rs13242233	0.86[JPT][hapmap]
rs1361988	0.86[JPT][hapmap]
rs1361995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361998	0.86[JPT][hapmap]
rs1361999	0.97[ASN][1000 genomes]
rs1362005	0.86[JPT][hapmap]
rs1419492	0.86[JPT][hapmap]
rs1419508	0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs1557646	0.86[JPT][hapmap]
rs1592370	1.00[JPT][hapmap]
rs17150172	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17619947	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17620189	1.00[JPT][hapmap]
rs17620525	0.86[JPT][hapmap]
rs17626816	0.86[JPT][hapmap]
rs17627206	0.86[JPT][hapmap]
rs17683174	0.86[JPT][hapmap]
rs17683391	0.86[JPT][hapmap]
rs17693362	1.00[JPT][hapmap]
rs1946109	0.86[JPT][hapmap]
rs1946114	1.00[JPT][hapmap]
rs1946115	1.00[JPT][hapmap]
rs1989849	0.85[JPT][hapmap]
rs1989850	0.86[JPT][hapmap]
rs2023733	0.86[JPT][hapmap]
rs2023734	0.86[JPT][hapmap]
rs2023735	0.86[JPT][hapmap]
rs2106600	0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs2106601	1.00[JPT][hapmap]
rs2157977	0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs2157978	0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs2157979	1.00[JPT][hapmap]
rs2214159	1.00[JPT][hapmap]
rs2283071	0.86[JPT][hapmap]
rs2283079	0.86[JPT][hapmap]
rs2299501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs2299506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299507	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299508	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2299509	1.00[JPT][hapmap]
rs2299510	1.00[JPT][hapmap]
rs2299511	1.00[JPT][hapmap]
rs2299516	0.85[JPT][hapmap]
rs2299517	0.86[JPT][hapmap]
rs2299518	0.86[JPT][hapmap]
rs2299519	0.85[JPT][hapmap]
rs2896376	1.00[JPT][hapmap]
rs35825148	0.97[ASN][1000 genomes]
rs4728053	0.86[JPT][hapmap]
rs4731323	0.86[JPT][hapmap]
rs4731330	0.86[JPT][hapmap]
rs4731331	0.86[JPT][hapmap]
rs6467099	0.86[JPT][hapmap]
rs6951643	0.86[JPT][hapmap]
rs6951771	0.86[JPT][hapmap]
rs6969572	1.00[JPT][hapmap]
rs727903	1.00[CHB][hapmap]
rs886179	1.00[JPT][hapmap]
rs929175	1.00[CHB][hapmap]
rs929211	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs950789	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs954661	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126375800-126376200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr7:126375800-126376400	Enhancers	Brain Hippocampus Middle	brain
3	chr7:126375800-126376600	Enhancers	Brain Substantia Nigra	brain

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