Variant report

Variant	rs4731323
Chromosome Location	chr7:126324030-126324031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1008260	1.00[JPT][hapmap]
rs10215498	0.86[JPT][hapmap]
rs10215590	0.86[JPT][hapmap]
rs10216287	0.86[JPT][hapmap]
rs10227255	0.85[JPT][hapmap]
rs10227949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229765	1.00[JPT][hapmap]
rs10239010	0.82[JPT][hapmap]
rs10241618	1.00[JPT][hapmap]
rs10252649	0.86[JPT][hapmap]
rs10254233	0.94[TSI][hapmap]
rs10254445	1.00[JPT][hapmap]
rs10254692	0.85[JPT][hapmap]
rs10257388	0.85[JPT][hapmap]
rs10259217	0.86[JPT][hapmap]
rs10259229	0.86[JPT][hapmap]
rs10271146	0.86[JPT][hapmap]
rs10278284	0.84[GIH][hapmap]
rs10487457	0.86[JPT][hapmap]
rs10487459	0.86[JPT][hapmap]
rs10487460	0.86[JPT][hapmap]
rs10954133	0.86[JPT][hapmap]
rs11763603	0.86[JPT][hapmap]
rs11763734	0.86[JPT][hapmap]
rs11768413	1.00[JPT][hapmap]
rs11769307	0.85[JPT][hapmap]
rs11769459	1.00[JPT][hapmap]
rs11769491	1.00[JPT][hapmap]
rs11770578	0.86[JPT][hapmap]
rs11773772	0.86[JPT][hapmap]
rs12333442	0.85[JPT][hapmap]
rs12333645	0.86[JPT][hapmap]
rs12706742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706745	0.86[JPT][hapmap]
rs12706746	1.00[JPT][hapmap]
rs12706747	1.00[JPT][hapmap]
rs13222700	0.86[JPT][hapmap]
rs13224779	0.86[JPT][hapmap]
rs13225829	1.00[JPT][hapmap]
rs13226065	1.00[JPT][hapmap]
rs13226841	0.86[JPT][hapmap]
rs13236505	0.86[JPT][hapmap]
rs13240076	1.00[JPT][hapmap]
rs13240418	1.00[JPT][hapmap]
rs13242233	1.00[JPT][hapmap]
rs1361983	0.85[GIH][hapmap];0.94[TSI][hapmap]
rs1361985	0.85[GIH][hapmap];0.94[TSI][hapmap]
rs1361988	1.00[JPT][hapmap]
rs1361995	0.86[JPT][hapmap]
rs1361998	1.00[JPT][hapmap]
rs1362005	1.00[JPT][hapmap]
rs1419492	1.00[JPT][hapmap]
rs1419496	0.94[TSI][hapmap]
rs1419508	0.86[JPT][hapmap]
rs1557646	1.00[JPT][hapmap]
rs1592370	1.00[JPT][hapmap]
rs17150172	0.86[JPT][hapmap]
rs17619947	0.86[JPT][hapmap]
rs17620189	0.86[JPT][hapmap]
rs17620525	1.00[JPT][hapmap]
rs17626816	1.00[JPT][hapmap]
rs17627206	1.00[JPT][hapmap]
rs17683174	1.00[JPT][hapmap]
rs17683391	1.00[JPT][hapmap]
rs17693362	1.00[JPT][hapmap]
rs1946109	1.00[JPT][hapmap]
rs1946113	0.89[GIH][hapmap]
rs1946114	0.86[JPT][hapmap]
rs1946115	0.86[JPT][hapmap]
rs1989849	1.00[JPT][hapmap]
rs1989850	1.00[JPT][hapmap]
rs2023733	1.00[JPT][hapmap]
rs2023734	1.00[JPT][hapmap]
rs2023735	1.00[JPT][hapmap]
rs2106352	0.85[JPT][hapmap]
rs2106353	0.90[CEU][hapmap]
rs2106601	0.86[JPT][hapmap]
rs2157753	0.86[JPT][hapmap]
rs2157977	0.86[JPT][hapmap]
rs2157978	0.85[JPT][hapmap]
rs2157979	0.86[JPT][hapmap]
rs2214159	0.85[JPT][hapmap]
rs2237761	0.83[TSI][hapmap]
rs2283071	1.00[JPT][hapmap]
rs2283076	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs2283079	1.00[JPT][hapmap]
rs2299501	0.86[JPT][hapmap]
rs2299502	0.85[JPT][hapmap]
rs2299503	0.86[JPT][hapmap]
rs2299505	0.86[JPT][hapmap]
rs2299506	0.86[JPT][hapmap]
rs2299507	0.86[JPT][hapmap]
rs2299508	0.86[JPT][hapmap]
rs2299509	0.86[JPT][hapmap]
rs2299510	0.86[JPT][hapmap]
rs2299511	0.86[JPT][hapmap]
rs2299516	1.00[JPT][hapmap]
rs2299517	1.00[JPT][hapmap]
rs2299518	1.00[JPT][hapmap]
rs2299519	1.00[JPT][hapmap]
rs2402820	0.83[TSI][hapmap]
rs2896376	0.86[JPT][hapmap]
rs3808154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4728047	0.86[EUR][1000 genomes]
rs4728053	1.00[JPT][hapmap]
rs4731330	1.00[JPT][hapmap]
rs4731331	1.00[JPT][hapmap]
rs55953926	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467099	1.00[JPT][hapmap]
rs67157588	0.86[EUR][1000 genomes]
rs6951643	1.00[JPT][hapmap]
rs6951771	1.00[JPT][hapmap]
rs6969572	0.86[JPT][hapmap]
rs6975541	0.85[JPT][hapmap]
rs769198	1.00[CHB][hapmap]
rs7795337	0.94[TSI][hapmap]
rs7804631	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809518	0.82[JPT][hapmap]
rs7810270	0.94[TSI][hapmap]
rs886179	0.85[JPT][hapmap]
rs929175	0.85[JPT][hapmap]
rs929211	1.00[JPT][hapmap]
rs950789	0.85[JPT][hapmap]
rs954661	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4731323	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126325000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:126323200-126324400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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