Variant report

Variant	rs12706746
Chromosome Location	chr7:126442859-126442860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126442832..126443335-chr7:127154316..127155202,2	MCF-7	breast:
2	7:126441098-126445427..7:127009457-127018926	GM12878	blood:
3	7:126441098-126445427..7:126746034-126750148	H1-hESC	embryonic stem cell:	embryo
4	7:126441098-126445427..7:126880504-126885902	H1-hESC	embryonic stem cell:	embryo
5	7:126441098-126445427..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo
6	7:126441098-126445427..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
7	7:126085913-126088095..7:126441098-126445427	GM12878	blood:
8	7:126441098-126445427..7:126890676-126899918	GM12878	blood:
9	7:126441098-126445427..7:126733290-126737485	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000179603	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1008260	1.00[JPT][hapmap]
rs10216287	0.84[JPT][hapmap]
rs10227255	0.84[JPT][hapmap]
rs10227949	0.82[JPT][hapmap]
rs10229765	0.82[JPT][hapmap]
rs10241618	0.84[JPT][hapmap]
rs10254445	1.00[JPT][hapmap]
rs10257388	0.84[JPT][hapmap]
rs10487459	0.84[JPT][hapmap]
rs11763603	0.84[JPT][hapmap]
rs11763734	0.84[JPT][hapmap]
rs11769459	0.84[JPT][hapmap]
rs11769491	1.00[JPT][hapmap]
rs11770578	0.84[JPT][hapmap]
rs12706742	1.00[JPT][hapmap]
rs12706745	0.84[JPT][hapmap]
rs12706747	0.84[JPT][hapmap]
rs13225829	0.82[JPT][hapmap]
rs13226065	0.84[JPT][hapmap]
rs13240076	0.84[JPT][hapmap]
rs13240418	1.00[JPT][hapmap]
rs13242233	0.84[JPT][hapmap]
rs1361988	1.00[JPT][hapmap]
rs1361998	0.84[JPT][hapmap]
rs1362005	0.84[JPT][hapmap]
rs1419492	0.84[JPT][hapmap]
rs1419508	0.84[JPT][hapmap]
rs1557646	1.00[JPT][hapmap]
rs1592370	0.82[JPT][hapmap]
rs17620525	0.84[JPT][hapmap]
rs17626816	0.84[JPT][hapmap]
rs17627206	1.00[JPT][hapmap]
rs17683174	1.00[JPT][hapmap]
rs17683391	1.00[JPT][hapmap]
rs17684592	0.82[JPT][hapmap]
rs17693362	0.82[JPT][hapmap]
rs1946109	0.84[JPT][hapmap]
rs1989849	1.00[JPT][hapmap]
rs1989850	1.00[JPT][hapmap]
rs2023733	0.84[JPT][hapmap]
rs2023734	1.00[JPT][hapmap]
rs2023735	1.00[JPT][hapmap]
rs2106352	0.84[JPT][hapmap]
rs2106353	0.82[JPT][hapmap]
rs2157753	0.84[JPT][hapmap]
rs2157977	0.84[JPT][hapmap]
rs2157978	0.82[JPT][hapmap]
rs2283071	0.84[JPT][hapmap]
rs2283076	0.82[JPT][hapmap]
rs2283079	1.00[JPT][hapmap]
rs2299503	0.84[JPT][hapmap]
rs2299505	0.84[JPT][hapmap]
rs2299507	0.84[JPT][hapmap]
rs2299516	0.82[JPT][hapmap]
rs2299517	1.00[JPT][hapmap]
rs2299518	0.84[JPT][hapmap]
rs2299519	1.00[JPT][hapmap]
rs2299520	0.81[ASN][1000 genomes]
rs3808154	0.82[JPT][hapmap]
rs4728053	0.84[JPT][hapmap]
rs4731323	1.00[JPT][hapmap]
rs4731330	1.00[JPT][hapmap]
rs4731331	0.84[JPT][hapmap]
rs6467099	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6951643	1.00[JPT][hapmap]
rs6951771	0.84[JPT][hapmap]
rs6975541	1.00[JPT][hapmap]
rs7809518	1.00[JPT][hapmap]
rs929175	0.82[JPT][hapmap]
rs929211	1.00[JPT][hapmap]
rs954661	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links