Variant report

Variant	rs12706742
Chromosome Location	chr7:126336074-126336075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126308425..126309973-chr7:126335993..126338773,2	K562	blood:
2	chr7:126335306..126336854-chr7:126339390..126341574,2	MCF-7	breast:
3	chr7:126329105..126333653-chr7:126334255..126342288,12	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1008260	1.00[JPT][hapmap]
rs10216287	0.86[JPT][hapmap]
rs10227949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229765	0.85[JPT][hapmap]
rs10241618	0.86[JPT][hapmap]
rs10254445	1.00[JPT][hapmap]
rs10487459	0.86[JPT][hapmap]
rs11763603	0.86[JPT][hapmap]
rs11763734	0.86[JPT][hapmap]
rs11769459	0.86[JPT][hapmap]
rs11769491	1.00[JPT][hapmap]
rs11770578	0.86[JPT][hapmap]
rs12706745	0.86[JPT][hapmap]
rs12706746	1.00[JPT][hapmap]
rs12706747	0.86[JPT][hapmap]
rs13225829	0.82[JPT][hapmap]
rs13226065	0.86[JPT][hapmap]
rs13240076	0.86[JPT][hapmap]
rs13240418	1.00[JPT][hapmap]
rs13242233	0.86[JPT][hapmap]
rs1361988	1.00[JPT][hapmap]
rs1361998	0.86[JPT][hapmap]
rs1362005	0.86[JPT][hapmap]
rs1419492	0.86[JPT][hapmap]
rs1419508	0.86[JPT][hapmap]
rs1557646	1.00[JPT][hapmap]
rs1592370	0.85[JPT][hapmap]
rs17620525	0.86[JPT][hapmap]
rs17626816	0.86[JPT][hapmap]
rs17627206	1.00[JPT][hapmap]
rs17683174	1.00[JPT][hapmap]
rs17683391	1.00[JPT][hapmap]
rs17693362	0.85[JPT][hapmap]
rs1946109	0.86[JPT][hapmap]
rs1989849	1.00[JPT][hapmap]
rs1989850	1.00[JPT][hapmap]
rs2023733	0.86[JPT][hapmap]
rs2023734	1.00[JPT][hapmap]
rs2023735	1.00[JPT][hapmap]
rs2106353	0.90[CEU][hapmap]
rs2157753	0.86[JPT][hapmap]
rs2157977	0.86[JPT][hapmap]
rs2157978	0.85[JPT][hapmap]
rs2283071	0.86[JPT][hapmap]
rs2283076	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs2283079	1.00[JPT][hapmap]
rs2299503	0.86[JPT][hapmap]
rs2299505	0.86[JPT][hapmap]
rs2299507	0.86[JPT][hapmap]
rs2299516	0.85[JPT][hapmap]
rs2299517	1.00[JPT][hapmap]
rs2299518	0.86[JPT][hapmap]
rs2299519	1.00[JPT][hapmap]
rs3808154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4728047	0.86[EUR][1000 genomes]
rs4728053	0.86[JPT][hapmap]
rs4731323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731330	1.00[JPT][hapmap]
rs4731331	0.86[JPT][hapmap]
rs55953926	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467099	0.86[JPT][hapmap]
rs67157588	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6951643	1.00[JPT][hapmap]
rs6951771	0.86[JPT][hapmap]
rs6975541	0.85[JPT][hapmap]
rs769198	1.00[CHB][hapmap]
rs7804631	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809518	0.82[JPT][hapmap]
rs929175	0.85[JPT][hapmap]
rs929211	1.00[JPT][hapmap]
rs954661	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126332400-126339000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:126332800-126336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:126336000-126339000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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