Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224336	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10225708	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10240139	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10277033	1.00[JPT][hapmap]
rs11769307	1.00[YRI][hapmap]
rs1345210	0.84[CEU][hapmap]
rs1361991	0.84[CEU][hapmap]
rs17613247	0.84[CEU][hapmap];0.86[MEX][hapmap]
rs17683462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17684388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17684592	1.00[YRI][hapmap]
rs17865082	1.00[YRI][hapmap]
rs2051681	1.00[JPT][hapmap]
rs28951079	1.00[JPT][hapmap]
rs6467093	1.00[CHB][hapmap]
rs6467094	1.00[CHB][hapmap]
rs6974164	1.00[CHB][hapmap]
rs73451279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs950789	1.00[YRI][hapmap]
rs9986951	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17683715	CPA1	cis	parietal	SCAN
rs17683715	TMEM209	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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