Variant report
| Variant | rs1026962 |
|---|---|
| Chromosome Location | chr8:20197030-20197031 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10112289 | 1.00[EUR][1000 genomes] |
| rs12114223 | 1.00[EUR][1000 genomes] |
| rs17092255 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17092285 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17092525 | 1.00[EUR][1000 genomes] |
| rs17092648 | 1.00[EUR][1000 genomes] |
| rs4330706 | 1.00[EUR][1000 genomes] |
| rs57350066 | 1.00[EUR][1000 genomes] |
| rs58021006 | 1.00[EUR][1000 genomes] |
| rs60949054 | 1.00[EUR][1000 genomes] |
| rs61249342 | 1.00[AMR][1000 genomes] |
| rs6981718 | 1.00[AMR][1000 genomes] |
| rs6985545 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7003050 | 1.00[EUR][1000 genomes] |
| rs7004136 | 1.00[EUR][1000 genomes] |
| rs7012806 | 1.00[EUR][1000 genomes] |
| rs7015313 | 1.00[EUR][1000 genomes] |
| rs7017244 | 1.00[EUR][1000 genomes] |
| rs7017444 | 1.00[EUR][1000 genomes] |
| rs7018201 | 1.00[EUR][1000 genomes] |
| rs73607619 | 1.00[EUR][1000 genomes] |
| rs73607621 | 1.00[EUR][1000 genomes] |
| rs73607627 | 1.00[EUR][1000 genomes] |
| rs73607631 | 1.00[EUR][1000 genomes] |
| rs73607698 | 1.00[EUR][1000 genomes] |
| rs73609138 | 1.00[EUR][1000 genomes] |
| rs73609140 | 1.00[EUR][1000 genomes] |
| rs73609141 | 1.00[EUR][1000 genomes] |
| rs73609174 | 1.00[EUR][1000 genomes] |
| rs73617815 | 1.00[EUR][1000 genomes] |
| rs7459906 | 1.00[EUR][1000 genomes] |
| rs7813418 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033511 | chr8:19751299-20625091 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv530877 | chr8:19873053-20593254 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv831256 | chr8:20162233-20300224 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:20187800-20200200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr8:20196200-20199000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
