Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10112289	1.00[EUR][1000 genomes]
rs1026962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114223	1.00[EUR][1000 genomes]
rs17092285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092525	1.00[EUR][1000 genomes]
rs4330706	1.00[EUR][1000 genomes]
rs57350066	1.00[EUR][1000 genomes]
rs58021006	1.00[EUR][1000 genomes]
rs60949054	1.00[EUR][1000 genomes]
rs61249342	1.00[AMR][1000 genomes]
rs6981718	1.00[AMR][1000 genomes]
rs6985545	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003050	1.00[EUR][1000 genomes]
rs7004136	1.00[EUR][1000 genomes]
rs7012806	1.00[EUR][1000 genomes]
rs7015313	1.00[EUR][1000 genomes]
rs7017244	1.00[EUR][1000 genomes]
rs7017444	1.00[EUR][1000 genomes]
rs7018201	1.00[EUR][1000 genomes]
rs73607619	1.00[EUR][1000 genomes]
rs73607621	1.00[EUR][1000 genomes]
rs73607627	1.00[EUR][1000 genomes]
rs73607631	1.00[EUR][1000 genomes]
rs73609138	1.00[EUR][1000 genomes]
rs73609140	1.00[EUR][1000 genomes]
rs73609141	1.00[EUR][1000 genomes]
rs73609174	1.00[EUR][1000 genomes]
rs73617815	1.00[EUR][1000 genomes]
rs7459906	1.00[EUR][1000 genomes]
rs7813418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20187800-20200200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:20191400-20192800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:20191400-20193000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:20191600-20192600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:20191600-20193000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:20191600-20193000	Enhancers	NHLF	lung
7	chr8:20191600-20193000	Enhancers	Osteobl	bone
8	chr8:20191800-20192600	Enhancers	NH-A	brain
9	chr8:20191800-20192800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:20191800-20192800	Enhancers	NHDF-Ad	bronchial
11	chr8:20192200-20192800	Enhancers	HSMM	muscle
12	chr8:20192200-20193000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:20192400-20192800	Enhancers	Ovary	ovary

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