Variant report

Variant	rs57350066
Chromosome Location	chr8:20349891-20349892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10112289	1.00[EUR][1000 genomes]
rs1026962	1.00[EUR][1000 genomes]
rs12114223	1.00[EUR][1000 genomes]
rs17092255	1.00[EUR][1000 genomes]
rs17092285	1.00[EUR][1000 genomes]
rs17092525	1.00[EUR][1000 genomes]
rs17092648	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17116648	1.00[EUR][1000 genomes]
rs4330706	1.00[EUR][1000 genomes]
rs58021006	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60949054	1.00[EUR][1000 genomes]
rs60973888	1.00[EUR][1000 genomes]
rs67850346	0.81[AFR][1000 genomes]
rs6985545	1.00[EUR][1000 genomes]
rs6993881	1.00[EUR][1000 genomes]
rs7003050	1.00[EUR][1000 genomes]
rs7004136	1.00[EUR][1000 genomes]
rs7012806	1.00[EUR][1000 genomes]
rs7015313	1.00[EUR][1000 genomes]
rs7017244	1.00[EUR][1000 genomes]
rs7017444	1.00[EUR][1000 genomes]
rs7018201	1.00[EUR][1000 genomes]
rs73607619	1.00[EUR][1000 genomes]
rs73607621	1.00[EUR][1000 genomes]
rs73607627	1.00[EUR][1000 genomes]
rs73607631	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73607698	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73609138	1.00[EUR][1000 genomes]
rs73609140	1.00[EUR][1000 genomes]
rs73609141	1.00[EUR][1000 genomes]
rs73609174	1.00[EUR][1000 genomes]
rs73617815	1.00[EUR][1000 genomes]
rs7459906	1.00[EUR][1000 genomes]
rs7813418	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20348000-20350400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:20348600-20350200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr8:20348600-20354600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:20348800-20350000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr8:20348800-20350400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr8:20348800-20353400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:20349000-20350200	Enhancers	Primary T cells from cord blood	blood
8	chr8:20349000-20350600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:20349000-20353200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:20349200-20350600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:20349200-20352600	Enhancers	Thymus	Thymus
12	chr8:20349400-20350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:20349400-20353000	Enhancers	Fetal Thymus	thymus
14	chr8:20349800-20351800	Enhancers	Dnd41	blood
15	chr8:20349800-20353400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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