Variant report

Variant	rs7015313
Chromosome Location	chr8:20292936-20292937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:20292816..20293400-chr8:21763210..21764065,2	MCF-7	breast:
2	chr8:20292913..20293496-chr8:21104301..21104905,3	MCF-7	breast:
3	chr8:20238473..20239020-chr8:20292504..20293024,2	MCF-7	breast:
4	chr8:20292679..20293278-chr8:20647078..20647630,2	MCF-7	breast:
5	chr8:20292611..20293286-chr8:21266630..21267414,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10112289	1.00[EUR][1000 genomes]
rs1026962	1.00[EUR][1000 genomes]
rs12114223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092255	1.00[EUR][1000 genomes]
rs17092285	1.00[EUR][1000 genomes]
rs17092525	1.00[EUR][1000 genomes]
rs17092648	1.00[EUR][1000 genomes]
rs4330706	1.00[EUR][1000 genomes]
rs57350066	1.00[EUR][1000 genomes]
rs58021006	1.00[EUR][1000 genomes]
rs60949054	1.00[EUR][1000 genomes]
rs60973888	1.00[EUR][1000 genomes]
rs6985545	1.00[EUR][1000 genomes]
rs7003050	1.00[EUR][1000 genomes]
rs7004136	1.00[EUR][1000 genomes]
rs7012806	1.00[EUR][1000 genomes]
rs7017244	1.00[EUR][1000 genomes]
rs7017444	1.00[EUR][1000 genomes]
rs7018201	1.00[EUR][1000 genomes]
rs73607619	1.00[EUR][1000 genomes]
rs73607621	1.00[EUR][1000 genomes]
rs73607627	1.00[EUR][1000 genomes]
rs73607631	1.00[EUR][1000 genomes]
rs73607698	1.00[EUR][1000 genomes]
rs73609138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73609140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73609141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73609174	1.00[EUR][1000 genomes]
rs73617815	1.00[EUR][1000 genomes]
rs7459906	1.00[EUR][1000 genomes]
rs7813418	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv831256	chr8:20162233-20300224	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20283200-20293000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:20291200-20293000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr8:20291600-20293000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:20291600-20293000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:20291800-20293000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:20291800-20293000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:20291800-20293000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:20291800-20293000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:20291800-20293600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:20291800-20294400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:20291800-20296200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:20292000-20293000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:20292000-20293600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:20292000-20294000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr8:20292000-20294200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:20292000-20296000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:20292200-20293200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:20292400-20293000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:20292400-20293200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr8:20292400-20293400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:20292400-20294000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:20292400-20294200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:20292400-20294200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:20292400-20294400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr8:20292400-20294400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr8:20292400-20295000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:20292400-20296000	Enhancers	Primary T cells from cord blood	blood
28	chr8:20292600-20293000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr8:20292600-20293400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:20292600-20294000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr8:20292600-20294200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr8:20292600-20294200	Enhancers	Stomach Mucosa	stomach
33	chr8:20292600-20294400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:20292600-20295200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr8:20292800-20293000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:20292800-20293000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:20292800-20293000	Active TSS	Brain Cingulate Gyrus	brain
38	chr8:20292800-20293000	Enhancers	Duodenum Mucosa	Duodenum
39	chr8:20292800-20295000	Enhancers	Fetal Brain Male	brain
40	chr8:20292800-20295400	Enhancers	Primary B cells from peripheral blood	blood

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