Variant report

Variant	rs1027009
Chromosome Location	chr15:53612224-53612225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1027011	1.00[AFR][1000 genomes]
rs11070972	0.93[AFR][1000 genomes]
rs11070973	0.93[AFR][1000 genomes]
rs11634899	0.93[AFR][1000 genomes]
rs12902290	1.00[AFR][1000 genomes]
rs1872700	0.88[AFR][1000 genomes]
rs272789	0.88[AFR][1000 genomes]
rs272796	0.88[AFR][1000 genomes]
rs272800	0.88[AFR][1000 genomes]
rs7168372	0.88[AFR][1000 genomes]
rs7169577	0.88[AFR][1000 genomes]
rs7170684	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53605400-53615200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:53605400-53617400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:53609000-53614800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:53609600-53615600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:53611600-53613200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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