Variant report
| Variant | rs7169577 |
|---|---|
| Chromosome Location | chr15:53619215-53619216 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-WDR72-4 | chr15:53618374-53622121 | ucscGeneNc_uc002ade_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1027009 | 0.88[AFR][1000 genomes] |
| rs1027011 | 0.88[AFR][1000 genomes] |
| rs11070972 | 0.82[AFR][1000 genomes] |
| rs11070973 | 0.82[AFR][1000 genomes] |
| rs11634899 | 0.82[AFR][1000 genomes] |
| rs12902290 | 0.88[AFR][1000 genomes] |
| rs1872700 | 1.00[AFR][1000 genomes] |
| rs272789 | 1.00[AFR][1000 genomes] |
| rs272796 | 1.00[AFR][1000 genomes] |
| rs272800 | 1.00[AFR][1000 genomes] |
| rs7168372 | 1.00[AFR][1000 genomes] |
| rs7170684 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037630 | chr15:53324645-53708925 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
