Variant report

Variant	rs11634899
Chromosome Location	chr15:53603910-53603911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1027009	0.93[AFR][1000 genomes]
rs1027011	0.93[AFR][1000 genomes]
rs11070972	1.00[AFR][1000 genomes]
rs11070973	1.00[AFR][1000 genomes]
rs12902290	0.93[AFR][1000 genomes]
rs1872700	0.82[AFR][1000 genomes]
rs272789	0.82[AFR][1000 genomes]
rs272796	0.82[AFR][1000 genomes]
rs272800	0.82[AFR][1000 genomes]
rs7168372	0.82[AFR][1000 genomes]
rs7169577	0.82[AFR][1000 genomes]
rs7170684	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53598200-53604600	Weak transcription	HepG2	liver
2	chr15:53598400-53604800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:53601000-53604400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:53601000-53604600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:53601000-53604800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:53601400-53607000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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