Variant report

Variant	rs272789
Chromosome Location	chr15:53633410-53633411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1027009	0.88[AFR][1000 genomes]
rs1027011	0.88[AFR][1000 genomes]
rs11070972	0.82[AFR][1000 genomes]
rs11070973	0.82[AFR][1000 genomes]
rs11634899	0.82[AFR][1000 genomes]
rs12902290	0.88[AFR][1000 genomes]
rs1872700	1.00[AFR][1000 genomes]
rs272796	1.00[AFR][1000 genomes]
rs272800	1.00[AFR][1000 genomes]
rs7168372	1.00[AFR][1000 genomes]
rs7169577	1.00[AFR][1000 genomes]
rs7170684	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3333657	chr15:53633160-53635258	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53630800-53639000	Weak transcription	HepG2	liver
2	chr15:53633400-53633600	Bivalent Enhancer	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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