Variant report

Variant	rs10271482
Chromosome Location	chr7:127215151-127215152
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127201455..127203783-chr7:127214712..127216389,2	MCF-7	breast:
2	chr7:127214790..127217568-chr7:127290797..127292847,2	MCF-7	breast:
3	chr7:127187757..127189501-chr7:127214982..127217423,2	K562	blood:
4	chr7:127193758..127196335-chr7:127214904..127216660,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240790	Chromatin interaction
ENSG00000197157	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085369	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10230430	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10237869	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10246003	0.95[EUR][1000 genomes]
rs10267162	0.86[EUR][1000 genomes]
rs10276292	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11763731	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13438123	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28807149	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6467139	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6973507	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6977152	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73459083	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7777815	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7781622	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7784533	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7811205	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv1791836	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1803984	chr7:127203830-127217590	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1825916	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1846876	chr7:127203830-127217590	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1850711	chr7:127203830-127217590	Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3475393	chr7:127213016-127219714	Strong transcription Genic enhancers Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv3529744	chr7:127213866-127218964	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv3475388	chr7:127214241-127219089	Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	esv1792091	chr7:127214251-127217601	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	esv1834249	chr7:127214251-127217601	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	esv1842495	chr7:127214251-127217601	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv1850959	chr7:127214251-127217601	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	esv3529747	chr7:127214266-127218889	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	esv3475394	chr7:127214582-127218260	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	nsv511990	chr7:127214737-127218162	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	esv3475389	chr7:127214766-127218514	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	esv1841108	chr7:127214787-127217601	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	esv3475390	chr7:127214833-127218083	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv3529745	chr7:127214866-127218090	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	esv3529749	chr7:127214870-127218072	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	esv3529748	chr7:127214883-127218021	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	esv3475391	chr7:127214892-127218052	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	esv3475392	chr7:127214893-127218057	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
25	esv3475387	chr7:127214903-127218008	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
26	esv3494744	chr7:127214911-127217744	Strong transcription Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
27	esv3494745	chr7:127214911-127217744	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
28	esv5344	chr7:127214921-127218070	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
29	esv3529750	chr7:127214925-127218021	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
30	esv3529746	chr7:127214925-127218028	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
31	esv995835	chr7:127214935-127217815	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
32	nsv820966	chr7:127214935-127217815	Weak transcription Enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
33	nsv824304	chr7:127214935-127217815	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
34	esv3475395	chr7:127214970-127217982	Strong transcription Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
35	esv995256	chr7:127214985-127217641	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
36	esv19124	chr7:127214985-127217698	Weak transcription Strong transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
37	nsv514451	chr7:127215012-127217452	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
38	nsv608381	chr7:127215136-127215975	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv608382	chr7:127215136-127216745	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
40	nsv608383	chr7:127215136-127216944	Strong transcription Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
41	nsv608384	chr7:127215136-127217165	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
42	nsv608385	chr7:127215136-127217254	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
43	nsv608386	chr7:127215136-127217464	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
44	esv1803434	chr7:127215136-127217590	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
45	esv1827372	chr7:127215136-127217590	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
46	esv1831181	chr7:127215136-127217590	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
47	esv1834152	chr7:127215136-127217590	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
48	esv1835296	chr7:127215136-127217590	Strong transcription Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
49	esv1836161	chr7:127215136-127217590	Strong transcription Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
50	esv1837458	chr7:127215136-127217590	Strong transcription Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127200600-127221400	Weak transcription	Pancreas	Pancrea
2	chr7:127203400-127220400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:127203600-127218400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:127203600-127221400	Weak transcription	Left Ventricle	heart
5	chr7:127203800-127218400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:127204400-127217000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:127204400-127221000	Weak transcription	Aorta	Aorta
8	chr7:127204800-127219800	Weak transcription	Liver	Liver
9	chr7:127205400-127217000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:127205400-127218200	Weak transcription	Lung	lung
11	chr7:127207800-127215200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:127208800-127218000	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:127208800-127221000	Weak transcription	Brain Anterior Caudate	brain
14	chr7:127209600-127218400	Weak transcription	Right Atrium	heart
15	chr7:127209600-127221600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:127209800-127218000	Weak transcription	Primary B cells from cord blood	blood
17	chr7:127210200-127221600	Weak transcription	Small Intestine	intestine
18	chr7:127210400-127218000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:127210400-127218200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:127210400-127219600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:127210400-127221000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:127210600-127217600	Weak transcription	Fetal Thymus	thymus
23	chr7:127210600-127218000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:127210600-127221000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:127211000-127219000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr7:127211200-127219000	Weak transcription	HSMM	muscle
27	chr7:127211400-127218400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:127212200-127218000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:127212200-127219000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:127212400-127218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:127212400-127218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:127212400-127218200	Weak transcription	HSMMtube	muscle
33	chr7:127212600-127218600	Weak transcription	NHDF-Ad	bronchial
34	chr7:127212600-127219000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:127212600-127219800	Weak transcription	Brain Substantia Nigra	brain
36	chr7:127212800-127218200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr7:127212800-127219200	Weak transcription	NHEK	skin
38	chr7:127212800-127221400	Weak transcription	Spleen	Spleen
39	chr7:127213000-127218000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:127213000-127218000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:127213000-127218600	Weak transcription	NHLF	lung
42	chr7:127213000-127221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:127213200-127218000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:127213200-127218400	Weak transcription	Thymus	Thymus
45	chr7:127213400-127218400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:127213400-127219000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:127213400-127220800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr7:127213400-127221000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:127213400-127221400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:127213600-127219200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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