Variant report

Variant	rs28807149
Chromosome Location	chr7:127210684-127210685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10085369	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10230430	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10237869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10246003	0.83[EUR][1000 genomes]
rs10258030	0.89[EUR][1000 genomes]
rs10267162	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10271482	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10276292	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1107491	0.87[EUR][1000 genomes]
rs11763731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13438123	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17151018	0.89[EUR][1000 genomes]
rs28393048	0.87[EUR][1000 genomes]
rs56406547	0.81[EUR][1000 genomes]
rs61667750	0.89[EUR][1000 genomes]
rs6467139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6977152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73459083	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7777815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7778716	0.89[EUR][1000 genomes]
rs7781622	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7784533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv1791836	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1803984	chr7:127203830-127217590	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1825916	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1846876	chr7:127203830-127217590	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1850711	chr7:127203830-127217590	Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127200600-127221400	Weak transcription	Pancreas	Pancrea
2	chr7:127203200-127214000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:127203200-127214200	Weak transcription	Primary T cells from cord blood	blood
4	chr7:127203400-127220400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:127203600-127211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:127203600-127218400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:127203600-127221400	Weak transcription	Left Ventricle	heart
8	chr7:127203800-127218400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:127204400-127217000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:127204400-127221000	Weak transcription	Aorta	Aorta
11	chr7:127204800-127219800	Weak transcription	Liver	Liver
12	chr7:127205400-127217000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:127205400-127218200	Weak transcription	Lung	lung
14	chr7:127207000-127211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:127207400-127214200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:127207800-127214600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:127207800-127215200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:127208600-127214600	Weak transcription	Gastric	stomach
19	chr7:127208800-127218000	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:127208800-127221000	Weak transcription	Brain Anterior Caudate	brain
21	chr7:127209600-127218400	Weak transcription	Right Atrium	heart
22	chr7:127209600-127221600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:127209800-127218000	Weak transcription	Primary B cells from cord blood	blood
24	chr7:127210200-127221600	Weak transcription	Small Intestine	intestine
25	chr7:127210400-127218000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr7:127210400-127218200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:127210400-127219600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:127210400-127221000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:127210600-127214800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:127210600-127217600	Weak transcription	Fetal Thymus	thymus
31	chr7:127210600-127218000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:127210600-127221000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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