Variant report

Variant	rs10258030
Chromosome Location	chr7:127188608-127188609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10085369	0.97[EUR][1000 genomes]
rs10230430	0.97[EUR][1000 genomes]
rs10237869	0.97[EUR][1000 genomes]
rs10246003	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10249714	0.87[AMR][1000 genomes]
rs10267162	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10276292	0.95[EUR][1000 genomes]
rs1107491	0.92[EUR][1000 genomes]
rs11763731	0.97[EUR][1000 genomes]
rs17151018	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28393048	0.92[EUR][1000 genomes]
rs28807149	0.89[EUR][1000 genomes]
rs56406547	0.81[EUR][1000 genomes]
rs61667750	0.89[EUR][1000 genomes]
rs6467139	0.89[EUR][1000 genomes]
rs6973507	0.92[EUR][1000 genomes]
rs6977152	0.95[EUR][1000 genomes]
rs73459063	0.81[EUR][1000 genomes]
rs73459083	0.95[EUR][1000 genomes]
rs7777815	0.87[EUR][1000 genomes]
rs7778716	0.89[EUR][1000 genomes]
rs7781622	0.81[EUR][1000 genomes]
rs7784533	0.89[EUR][1000 genomes]
rs7811205	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127186600-127200400	Weak transcription	Pancreas	Pancrea
2	chr7:127188000-127192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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