Variant report
| Variant | rs17151018 |
|---|---|
| Chromosome Location | chr7:127202142-127202143 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127114890..127116879-chr7:127201699..127204076,2 | K562 | blood: | |
| 2 | chr7:127201455..127203783-chr7:127214712..127216389,2 | MCF-7 | breast: | |
| 3 | chr7:127200505..127203389-chr7:127219797..127221382,2 | K562 | blood: | |
| 4 | chr7:127201088..127203577-chr7:127205248..127208135,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10085369 | 0.97[EUR][1000 genomes] |
| rs10230430 | 0.97[EUR][1000 genomes] |
| rs10237869 | 0.97[EUR][1000 genomes] |
| rs10246003 | 0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10249714 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs10258030 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10267162 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10276292 | 0.95[EUR][1000 genomes] |
| rs1107491 | 0.92[EUR][1000 genomes] |
| rs11763731 | 0.97[EUR][1000 genomes] |
| rs28393048 | 0.92[EUR][1000 genomes] |
| rs28807149 | 0.89[EUR][1000 genomes] |
| rs56406547 | 0.81[EUR][1000 genomes] |
| rs61667750 | 0.89[EUR][1000 genomes] |
| rs6467139 | 0.89[EUR][1000 genomes] |
| rs6973507 | 0.92[EUR][1000 genomes] |
| rs6977152 | 0.95[EUR][1000 genomes] |
| rs73459063 | 0.81[EUR][1000 genomes] |
| rs73459083 | 0.95[EUR][1000 genomes] |
| rs7777815 | 0.87[EUR][1000 genomes] |
| rs7778716 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs7781622 | 0.81[EUR][1000 genomes] |
| rs7784533 | 0.89[EUR][1000 genomes] |
| rs7811205 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv1801682 | chr7:127188972-127209982 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:127200600-127221400 | Weak transcription | Pancreas | Pancrea |
