Variant report

Variant	rs6977152
Chromosome Location	chr7:127203830-127203831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127114890..127116879-chr7:127201699..127204076,2	K562	blood:
2	chr7:127203098..127205037-chr7:127222496..127224357,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10085369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10230430	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10237869	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10258030	0.95[EUR][1000 genomes]
rs10267162	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10271482	0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10276292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1107491	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs11763731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13438123	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17151018	0.95[EUR][1000 genomes]
rs28393048	0.87[EUR][1000 genomes]
rs28807149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56406547	0.81[EUR][1000 genomes]
rs61667750	0.89[EUR][1000 genomes]
rs6467139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6973507	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73459083	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7778716	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.89[EUR][1000 genomes]
rs7781622	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7784533	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7811205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv1801682	chr7:127188972-127209982	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3336294	chr7:127203207-127205926	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1791836	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1803984	chr7:127203830-127217590	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1825916	chr7:127203830-127217590	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv1846876	chr7:127203830-127217590	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1850711	chr7:127203830-127217590	Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127200600-127221400	Weak transcription	Pancreas	Pancrea
2	chr7:127203200-127214000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:127203200-127214200	Weak transcription	Primary T cells from cord blood	blood
4	chr7:127203400-127220400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:127203600-127211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:127203600-127218400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:127203600-127221400	Weak transcription	Left Ventricle	heart
8	chr7:127203800-127218400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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