Variant report
| Variant | rs73459083 |
|---|---|
| Chromosome Location | chr7:127196227-127196228 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127193758..127196335-chr7:127214904..127216660,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10085369 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10230430 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10237869 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10258030 | 0.95[EUR][1000 genomes] |
| rs10267162 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10271482 | 0.97[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10276292 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1107491 | 0.87[EUR][1000 genomes] |
| rs11763731 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13438123 | 0.90[AMR][1000 genomes] |
| rs17151018 | 0.95[EUR][1000 genomes] |
| rs28393048 | 0.87[EUR][1000 genomes] |
| rs28807149 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56406547 | 0.81[EUR][1000 genomes] |
| rs61667750 | 0.89[EUR][1000 genomes] |
| rs6467139 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6973507 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6977152 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7777815 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7778716 | 0.89[EUR][1000 genomes] |
| rs7781622 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7784533 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7811205 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv1801682 | chr7:127188972-127209982 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:127186600-127200400 | Weak transcription | Pancreas | Pancrea |
