Variant report

Variant	rs10272339
Chromosome Location	chr7:120379454-120379455
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120378952..120380613-chr7:120434028..120436380,2	K562	blood:
2	chr7:120377754..120380696-chr7:120387574..120390011,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10245393	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10252574	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10256716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468361	1.00[CHB][hapmap]
rs17142902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142908	1.00[CHB][hapmap]
rs17142964	1.00[ASN][1000 genomes]
rs17142967	1.00[ASN][1000 genomes]
rs17142974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1859534	0.82[JPT][hapmap]
rs41424845	1.00[JPT][hapmap]
rs4730974	1.00[JPT][hapmap]
rs6466755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6944490	1.00[CHB][hapmap]
rs6977602	0.81[ASN][1000 genomes]
rs73425840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777916	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7790895	1.00[JPT][hapmap]
rs7795370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7806523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7812111	1.00[JPT][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120365000-120380600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:120373200-120382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:120374200-120380600	Weak transcription	Psoas Muscle	Psoas
4	chr7:120375400-120380400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:120376200-120380400	Weak transcription	Fetal Lung	lung
6	chr7:120376400-120380400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:120376400-120380600	Weak transcription	NHLF	lung
8	chr7:120378000-120379800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:120378200-120379800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:120378200-120379800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:120378400-120379600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:120378400-120380600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:120378400-120380600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:120378400-120380600	Enhancers	Colon Smooth Muscle	Colon
15	chr7:120378800-120379600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:120378800-120380000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr7:120378800-120380000	Enhancers	Brain Anterior Caudate	brain
18	chr7:120378800-120380600	Enhancers	K562	blood
19	chr7:120378800-120382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:120379000-120380000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:120379000-120380400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:120379000-120381600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:120379400-120380400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:120379400-120381400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:120379400-120382400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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