Variant report

Variant	rs7795370
Chromosome Location	chr7:120381751-120381752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:120381741-120382056	MCF10A-Er-Src	breast:	n/a	n/a
2	GATA3	chr7:120381522-120381934	T-47D	breast:	n/a	n/a
3	GATA3	chr7:120381492-120381827	T-47D	breast:	n/a	n/a
4	FOS	chr7:120381741-120382031	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA1	chr7:120381427-120381865	T-47D	breast:	n/a	chr7:120381729-120381741 chr7:120381564-120381576

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120380508..120383141-chr7:121034892..121036653,2	K562	blood:
2	chr7:120380461..120382564-chr7:120588648..120590998,2	K562	blood:

Variant related genes	Relation type
KCND2	TF binding region
ENSG00000196937	Chromatin interaction
ENSG00000071243	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10245393	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10251949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10252574	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10256493	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10272339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10487403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1468361	1.00[CHB][hapmap]
rs17142902	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142908	1.00[CHB][hapmap]
rs17142964	0.81[ASN][1000 genomes]
rs17142967	0.81[ASN][1000 genomes]
rs17142974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs41424845	1.00[JPT][hapmap]
rs4730974	1.00[JPT][hapmap]
rs6466755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6944490	1.00[CHB][hapmap]
rs6977602	1.00[ASN][1000 genomes]
rs73425840	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7777916	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790895	1.00[JPT][hapmap]
rs7806523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812111	1.00[JPT][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120373200-120382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120378800-120382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:120379400-120382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:120379600-120381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:120379600-120382200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:120380000-120382200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:120380200-120383400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:120380400-120381800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:120380400-120382400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:120380600-120383800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:120381000-120381800	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:120381000-120382200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:120381000-120382200	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:120381000-120382200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:120381000-120382600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:120381000-120382600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:120381000-120383200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:120381000-120383400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:120381000-120385800	Weak transcription	Ovary	ovary
20	chr7:120381000-120387000	Weak transcription	Right Atrium	heart
21	chr7:120381200-120381800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:120381200-120391000	Weak transcription	Adipose Nuclei	Adipose
23	chr7:120381400-120383200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:120381400-120383200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr7:120381600-120381800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:120381600-120382000	Enhancers	Liver	Liver
27	chr7:120381600-120383400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:120381600-120383800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links