Variant report

Variant	rs1032822
Chromosome Location	chr1:59007262-59007263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr1:59006965-59007332	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59004925..59008153-chr1:59009746..59011637,3	MCF-7	breast:
2	chr1:59004943..59009695-chr1:59010232..59015133,7	K562	blood:

Variant related genes	Relation type
OMA1	TF binding region
ENSG00000162600	Chromatin interaction
ENSG00000173406	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs186823	1.00[AMR][1000 genomes]
rs2406786	1.00[AMR][1000 genomes]
rs4912348	1.00[AMR][1000 genomes]
rs549237	1.00[AMR][1000 genomes]
rs6587823	1.00[AMR][1000 genomes]
rs6674886	1.00[AMR][1000 genomes]
rs6683003	1.00[AMR][1000 genomes]
rs7548248	1.00[AMR][1000 genomes]
rs7550981	1.00[AMR][1000 genomes]
rs902925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58931200-59010800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:58966600-59010600	Weak transcription	Placenta	Placenta
3	chr1:58967600-59010600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:58974800-59010800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:58974800-59011800	Weak transcription	Spleen	Spleen
6	chr1:58975000-59010600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:58975000-59010800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:58977200-59010800	Weak transcription	Brain Angular Gyrus	brain
9	chr1:58977200-59011400	Weak transcription	Ovary	ovary
10	chr1:58977400-59008600	Weak transcription	Brain Anterior Caudate	brain
11	chr1:58977400-59010400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:58977400-59010600	Weak transcription	Aorta	Aorta
13	chr1:58977400-59010600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:58977400-59010600	Weak transcription	Psoas Muscle	Psoas
15	chr1:58977400-59011400	Weak transcription	Left Ventricle	heart
16	chr1:58977400-59011400	Weak transcription	Lung	lung
17	chr1:58977600-59011000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:58978200-59010200	Weak transcription	Dnd41	blood
19	chr1:58979000-59011400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:58982200-59008200	Weak transcription	Brain Substantia Nigra	brain
21	chr1:58985200-59010600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:58985800-59010400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr1:58985800-59010600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:58989200-59010600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:58989400-59010600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:58990800-59008200	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:58990800-59011000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:58992400-59010800	Weak transcription	Adipose Nuclei	Adipose
29	chr1:58993000-59008400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:58993000-59010400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr1:58993000-59010600	Weak transcription	Liver	Liver
32	chr1:58994200-59011000	Weak transcription	HSMM	muscle
33	chr1:58994400-59010800	Weak transcription	NHEK	skin
34	chr1:58994600-59010600	Weak transcription	NHDF-Ad	bronchial
35	chr1:58995000-59010600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:58996200-59011000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr1:58996600-59010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:58997200-59010200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:58997200-59010800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:58997800-59010600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr1:58998200-59010600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr1:58998200-59010800	Weak transcription	GM12878-XiMat	blood
43	chr1:58999000-59010600	Weak transcription	Osteobl	bone
44	chr1:59001200-59011400	Weak transcription	Pancreas	Pancrea
45	chr1:59001800-59011200	Weak transcription	Right Ventricle	heart
46	chr1:59002000-59009000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:59002400-59010600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:59002600-59010600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr1:59003800-59009000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:59004200-59010800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links