Variant report

Variant	rs6587823
Chromosome Location	chr1:58985900-58985901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:58981813..58983510-chr1:58984271..58986975,2	K562	blood:
2	chr1:58980707..58982320-chr1:58984607..58986505,2	MCF-7	breast:
3	chr1:58983446..58986008-chr1:59008978..59011103,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1032822	1.00[AMR][1000 genomes]
rs186823	1.00[AMR][1000 genomes]
rs2406786	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4912348	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs549237	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6683003	1.00[AMR][1000 genomes]
rs7548248	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550981	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs902925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv998092	chr1:58978327-59002319	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58931200-59010800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:58934800-58994000	Weak transcription	HSMM	muscle
3	chr1:58946400-58993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:58953200-58986000	Weak transcription	Colonic Mucosa	Colon
5	chr1:58953600-58999200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:58955000-58986400	Weak transcription	Gastric	stomach
7	chr1:58955000-58988200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr1:58963800-58999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:58964800-58986400	Weak transcription	K562	blood
10	chr1:58966600-59010600	Weak transcription	Placenta	Placenta
11	chr1:58967600-59010600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:58968200-58986400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:58974600-58987600	Weak transcription	Right Ventricle	heart
14	chr1:58974800-58991600	Weak transcription	Esophagus	oesophagus
15	chr1:58974800-59005000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:58974800-59010800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:58974800-59011800	Weak transcription	Spleen	Spleen
18	chr1:58975000-59010600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:58975000-59010800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:58977000-58993000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:58977200-58994000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:58977200-59005000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:58977200-59010800	Weak transcription	Brain Angular Gyrus	brain
24	chr1:58977200-59011400	Weak transcription	Ovary	ovary
25	chr1:58977400-58987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:58977400-58988600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr1:58977400-58989400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:58977400-58990200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:58977400-58990200	Weak transcription	Fetal Kidney	kidney
30	chr1:58977400-58994200	Weak transcription	Fetal Lung	lung
31	chr1:58977400-58994200	Weak transcription	Fetal Thymus	thymus
32	chr1:58977400-58994400	Weak transcription	Thymus	Thymus
33	chr1:58977400-58996200	Weak transcription	Fetal Stomach	stomach
34	chr1:58977400-58999000	Weak transcription	Fetal Muscle Leg	muscle
35	chr1:58977400-59005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:58977400-59008600	Weak transcription	Brain Anterior Caudate	brain
37	chr1:58977400-59010400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:58977400-59010600	Weak transcription	Aorta	Aorta
39	chr1:58977400-59010600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr1:58977400-59010600	Weak transcription	Psoas Muscle	Psoas
41	chr1:58977400-59011400	Weak transcription	Left Ventricle	heart
42	chr1:58977400-59011400	Weak transcription	Lung	lung
43	chr1:58977600-58988600	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:58977600-58988600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:58977600-59011000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:58978200-59010200	Weak transcription	Dnd41	blood
47	chr1:58978400-58991800	Weak transcription	Fetal Heart	heart
48	chr1:58979000-59005400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:58979000-59011400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:58979200-58993200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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