The 2.0 version of rSNPBase

Variant report

Variant rs6674886
Chromosome Location chr1:59003872-59003873
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:58966600-59010600 Weak transcription Placenta Placenta
3 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:58974800-59005000 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:58974800-59010800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:58974800-59011800 Weak transcription Spleen Spleen
7 chr1:58975000-59010600 Weak transcription Stomach Smooth Muscle stomach
8 chr1:58975000-59010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr1:58977200-59005000 Weak transcription Rectal Smooth Muscle rectum
10 chr1:58977200-59010800 Weak transcription Brain Angular Gyrus brain
11 chr1:58977200-59011400 Weak transcription Ovary ovary
12 chr1:58977400-59005400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:58977400-59008600 Weak transcription Brain Anterior Caudate brain
14 chr1:58977400-59010400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:58977400-59010600 Weak transcription Aorta Aorta
16 chr1:58977400-59010600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:58977400-59010600 Weak transcription Psoas Muscle Psoas
18 chr1:58977400-59011400 Weak transcription Left Ventricle heart
19 chr1:58977400-59011400 Weak transcription Lung lung
20 chr1:58977600-59011000 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr1:58978200-59010200 Weak transcription Dnd41 blood
22 chr1:58979000-59005400 Weak transcription Duodenum Mucosa Duodenum
23 chr1:58979000-59011400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:58982200-59008200 Weak transcription Brain Substantia Nigra brain
25 chr1:58985200-59010600 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:58985800-59010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:58985800-59010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr1:58989200-59004600 Weak transcription Colon Smooth Muscle Colon
29 chr1:58989200-59010600 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr1:58989400-59010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:58990800-59008200 Weak transcription Brain Hippocampus Middle brain
32 chr1:58990800-59011000 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:58992400-59010800 Weak transcription Adipose Nuclei Adipose
34 chr1:58993000-59004400 Weak transcription Primary T cells fromperipheralblood blood
35 chr1:58993000-59008400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:58993000-59010400 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:58993000-59010600 Weak transcription Liver Liver
38 chr1:58994200-59011000 Weak transcription HSMM muscle
39 chr1:58994400-59010800 Weak transcription NHEK skin
40 chr1:58994600-59005000 Weak transcription Fetal Lung lung
41 chr1:58994600-59010600 Weak transcription NHDF-Ad bronchial
42 chr1:58995000-59004600 Weak transcription Fetal Intestine Large intestine
43 chr1:58995000-59004600 Weak transcription Fetal Intestine Small intestine
44 chr1:58995000-59010600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:58995200-59005000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:58996200-59011000 Weak transcription Primary hematopoietic stem cells blood
47 chr1:58996600-59004400 Weak transcription Primary T cells from cord blood blood
48 chr1:58996600-59010600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:58997200-59010200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:58997200-59010800 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015