Variant report

Variant	rs6683003
Chromosome Location	chr1:59051428-59051429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59047843..59052771-chr1:59082760..59087529,8	MCF-7	breast:
2	chr1:59048457..59052619-chr1:59081708..59087602,8	MCF-7	breast:
3	chr1:59049910..59054215-chr1:59054903..59060265,8	MCF-7	breast:
4	chr1:59049755..59053628-chr1:59060314..59062387,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1032822	1.00[AMR][1000 genomes]
rs186823	1.00[AMR][1000 genomes]
rs2406786	1.00[AMR][1000 genomes]
rs4912348	1.00[AMR][1000 genomes]
rs549237	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs6587823	1.00[AMR][1000 genomes]
rs6674886	1.00[AMR][1000 genomes]
rs7548248	1.00[AMR][1000 genomes]
rs7550981	1.00[AMR][1000 genomes]
rs902925	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59049000-59051600	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:59049000-59051600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:59049000-59052000	Enhancers	HSMMtube	muscle
4	chr1:59049000-59052200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59049000-59052400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:59049000-59052400	Enhancers	Fetal Lung	lung
7	chr1:59049000-59052800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:59049000-59052800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:59049200-59051600	Enhancers	Adipose Nuclei	Adipose
10	chr1:59049200-59052400	Enhancers	Aorta	Aorta
11	chr1:59049200-59052400	Enhancers	NHDF-Ad	bronchial
12	chr1:59049200-59052800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:59049200-59052800	Enhancers	Esophagus	oesophagus
14	chr1:59049400-59057800	Weak transcription	Gastric	stomach
15	chr1:59049800-59051600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:59049800-59052800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:59049800-59052800	Enhancers	Ovary	ovary
18	chr1:59050000-59051800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:59050200-59051600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:59050200-59052400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:59050200-59052800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:59050200-59052800	Enhancers	HMEC	breast
23	chr1:59050200-59052800	Enhancers	HSMM	muscle
24	chr1:59050200-59053000	Enhancers	HUVEC	blood vessel
25	chr1:59050400-59052000	Enhancers	Hela-S3	cervix
26	chr1:59050400-59052400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:59050400-59052400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:59050400-59052600	Enhancers	NH-A	brain
29	chr1:59050400-59052600	Enhancers	NHLF	lung
30	chr1:59050400-59052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:59050600-59051800	Enhancers	A549	lung
32	chr1:59050600-59052800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:59050600-59053000	Enhancers	Osteobl	bone
34	chr1:59050600-59057400	Weak transcription	Right Atrium	heart
35	chr1:59050800-59051600	Enhancers	Fetal Stomach	stomach
36	chr1:59050800-59052200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr1:59050800-59052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:59051000-59051800	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr1:59051000-59052000	Enhancers	NHEK	skin
40	chr1:59051200-59051600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr1:59051200-59052000	Weak transcription	Lung	lung
42	chr1:59051200-59056000	Weak transcription	Pancreas	Pancrea
43	chr1:59051200-59063400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr1:59051400-59051800	Weak transcription	Spleen	Spleen

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