Variant report

Variant	rs1034025
Chromosome Location	chr10:22539857-22539858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22538223..22543352-chr10:22603196..22608426,8	MCF-7	breast:
2	chr10:22291156..22293499-chr10:22539537..22541929,2	MCF-7	breast:
3	chr10:22538623..22542248-chr10:22633707..22637357,3	MCF-7	breast:
4	chr10:22282518..22284772-chr10:22539596..22541892,2	MCF-7	breast:
5	chr10:22536525..22546833-chr10:22602936..22612723,20	MCF-7	breast:
6	chr10:22539822..22541488-chr10:22544783..22546903,2	K562	blood:
7	chr10:22532066..22534921-chr10:22539657..22541177,2	MCF-7	breast:
8	chr10:22532104..22538523-chr10:22539605..22546070,9	MCF-7	breast:
9	chr10:22517040..22520023-chr10:22539675..22542427,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148444	Chromatin interaction
ENSG00000261671	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000269897	Chromatin interaction
ENSG00000077327	Chromatin interaction
ENSG00000136770	Chromatin interaction

rs_ID	r²[population]
rs11012912	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012914	1.00[ASN][1000 genomes]
rs11012928	1.00[ASN][1000 genomes]
rs12247178	1.00[ASN][1000 genomes]
rs12254097	1.00[ASN][1000 genomes]
rs12261069	1.00[ASN][1000 genomes]
rs16906095	1.00[ASN][1000 genomes]
rs2363568	1.00[JPT][hapmap]
rs6482211	1.00[CEU][hapmap]
rs7072756	1.00[JPT][hapmap]
rs7083590	1.00[ASN][1000 genomes]
rs73596588	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915647	1.00[CEU][hapmap]

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22534000-22540000	Weak transcription	Primary B cells from cord blood	blood
2	chr10:22534400-22540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:22534600-22540200	Weak transcription	HSMMtube	muscle
4	chr10:22534800-22540200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:22535000-22540000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:22536600-22540200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:22536600-22540200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:22536600-22540200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:22536800-22540000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:22536800-22540000	Weak transcription	NHEK	skin
11	chr10:22536800-22540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:22536800-22540200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:22536800-22540200	Weak transcription	Stomach Mucosa	stomach
14	chr10:22536800-22540200	Weak transcription	HSMM	muscle
15	chr10:22536800-22540200	Weak transcription	HUVEC	blood vessel
16	chr10:22536800-22540200	Weak transcription	NH-A	brain
17	chr10:22536800-22540200	Weak transcription	NHDF-Ad	bronchial
18	chr10:22536800-22540200	Weak transcription	NHLF	lung
19	chr10:22536800-22540400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:22537000-22540200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:22537000-22540200	Weak transcription	HMEC	breast
22	chr10:22537200-22540000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:22537600-22540200	Weak transcription	Hela-S3	cervix
24	chr10:22539000-22540000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:22539000-22540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr10:22539200-22540000	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:22539200-22540200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:22539200-22540200	Enhancers	A549	lung
29	chr10:22539400-22540000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr10:22539400-22540000	Enhancers	Brain Hippocampus Middle	brain
31	chr10:22539400-22540200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:22539400-22540200	Enhancers	Colon Smooth Muscle	Colon
33	chr10:22539400-22540400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:22539400-22543000	Active TSS	Right Atrium	heart
35	chr10:22539600-22540000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:22539600-22540000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:22539600-22540000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:22539600-22540000	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr10:22539600-22540000	Enhancers	Osteobl	bone
40	chr10:22539600-22540200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr10:22539600-22540200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:22539600-22540200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr10:22539600-22540200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:22539600-22540200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:22539800-22540000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr10:22539800-22540200	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr10:22539800-22540200	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr10:22539800-22540200	Enhancers	Brain Anterior Caudate	brain
49	chr10:22539800-22542400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:22539800-22542800	Active TSS	Primary T helper naive cells from peripheral blood	blood

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