The 2.0 version of rSNPBase
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Variant report
Variant
rs12247178
Chromosome Location
chr10:22554453-22554454
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr10:22553134..22554722-chr10:22557996..22559546,2
K562
blood:
2
chr10:22545566..22547300-chr10:22552900..22554689,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000261671
Chromatin interaction
Extended variants information (count: 9 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:9)
rs_ID
r
2
[population]
rs1034025
1.00[ASN][1000 genomes]
rs11012912
1.00[ASN][1000 genomes]
rs11012914
1.00[ASN][1000 genomes]
rs11012928
1.00[ASN][1000 genomes]
rs12254097
1.00[ASN][1000 genomes]
rs12261069
1.00[ASN][1000 genomes]
rs16906095
1.00[ASN][1000 genomes]
rs7083590
1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596588
1.00[ASN][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links