Variant report
| Variant | rs11012912 |
|---|---|
| Chromosome Location | chr10:22555570-22555571 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr10:22555110-22555572 | Hela-S3 | cervix: | n/a | chr10:22555414-22555423 chr10:22555127-22555138 |
| 2 | CEBPB | chr10:22555014-22555578 | A549 | lung: | n/a | chr10:22555414-22555423 chr10:22555127-22555138 |
| 3 | POLR2A | chr10:22555531-22555682 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233318 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1034025 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11012914 | 1.00[ASN][1000 genomes] |
| rs11012928 | 1.00[ASN][1000 genomes] |
| rs12247178 | 1.00[ASN][1000 genomes] |
| rs12254097 | 1.00[ASN][1000 genomes] |
| rs12261069 | 1.00[ASN][1000 genomes] |
| rs16906095 | 1.00[ASN][1000 genomes] |
| rs56158165 | 0.81[EUR][1000 genomes] |
| rs59489318 | 0.90[EUR][1000 genomes] |
| rs6482211 | 1.00[CEU][hapmap] |
| rs7083590 | 1.00[ASN][1000 genomes] |
| rs73596588 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7915647 | 1.00[CEU][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
