Variant report

Variant	rs12261069
Chromosome Location	chr10:22567159-22567160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1034025	1.00[ASN][1000 genomes]
rs11012912	1.00[ASN][1000 genomes]
rs11012914	1.00[ASN][1000 genomes]
rs11012928	1.00[ASN][1000 genomes]
rs12247178	1.00[ASN][1000 genomes]
rs12254097	1.00[ASN][1000 genomes]
rs16906095	1.00[ASN][1000 genomes]
rs7083590	1.00[ASN][1000 genomes]
rs73596588	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22566600-22567600	Active TSS	Placenta	Placenta
2	chr10:22566600-22567800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:22566800-22567200	Active TSS	Esophagus	oesophagus
4	chr10:22566800-22567400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:22566800-22567400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:22566800-22567400	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr10:22566800-22567400	Active TSS	Rectal Smooth Muscle	rectum
8	chr10:22566800-22567600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr10:22566800-22567800	Active TSS	Colonic Mucosa	Colon
10	chr10:22566800-22569200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:22566800-22570000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:22566800-22570000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:22567000-22567400	Bivalent/Poised TSS	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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